MmuALTA0020717-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:134563524-134565541:-
Coord C1 exon
chr7:134564919-134565541
Coord A exon
chr7:134563620-134563623
Coord C2 exon
chr7:134563524-134563619
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGATTGTTTTCATTTTTAAGACA
3' ss Score
6.29
Exon sequences
Seq C1 exon
ACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCGGTGAGGCCCCGAGTCAGAGCCCCGCCCCCATCCTCCTGGGGGTTCACCGGGGAGTTGCAGTAGACCGATCAAGTGGATTATGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTCCTCGGGAGTCTCCATTCAGGCAAGAGCATCGCAAACCCTGTCCAGGTTAATGTGTGCATAAGTTCCGAGGAGGTGCCCTCACCCTAGTGGGATGCTATCTGCCCCGGCCAGCCTCTCAGGCCAGCACTGTGACCCCTGTTCTCTCTCAGGGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq A exon
ACAG
Seq C2 exon
GTAGCTCTGGCTGGCCTGGAACTCAGCATTTAGACCGGGTTGTCTCCAAACCCACAGAAACCTACCTGCCTTTCCTCTGAAGTGCTAGGGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=0.577
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGGGGAGTGAGGCTT
R:
AAATGCTGAGTTCCAGGCCAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: