MmuALTD1042846-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:127421405-127421909:-
Coord C1 exon
chr7:127421809-127421909
Coord A exon
chr7:127421623-127421808
Coord C2 exon
chr7:127421405-127421518
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
3' ss Seq
TGACCCCTGTTCTCTCTCAGGGT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CGTGTACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCCGAGTCAGAGCCCCGCCCCCATCCTCCTGGGGGTTCACCGGGGAGTTGCAGTAGACCGATCAAGTGGATTATGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTCCTCGGGAGTCTCCATTCAGGCAAGAGCATCGCAAACCCTGTCCAG
Seq C2 exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTACTTCTCCCCGCAG
R:
GGAGCTCCTCCCAGGCTTTC
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types