RnoINT0168585 @ rn6
Intron Retention
Gene
ENSRNOG00000018379 | Zfp688
Description
zinc finger protein 688 [Source:RGD Symbol;Acc:1310765]
Coordinates
chr1:198866137-198868520:-
Coord C1 exon
chr1:198868407-198868520
Coord A exon
chr1:198866655-198868406
Coord C2 exon
chr1:198866137-198866654
Length
1752 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AATCAATTTCTGTTTCCCAGGAG
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq A exon
GTGAGGGATTGGCCCAAGTCCTCCCGAAACTTGTTTGTCCGGGGGTTTCTTCTCTAGTAAACCTTTCTTTCAGATTCCCCATTCCAGCATCCCTACAGAATTTAAAGAGCCAACATGTTCCTATACTAAAGGAAAGAAAGCCTACCTGTTAAGAGTTTTGAAAATTCGGGAGAACTGTCCTATTAAAAACAGAATAGGGGGTCTGGAGAGATGGCTCACCAATCAAGAGCAACTGCTGTTCTTCCTGAGTATCTGGGTTCAATCCCCAGCACCCACATGGCAGCTTACAGCTGTCTGTAACTCCAGTTCTAGGGGCTGGAATGCACTAGACCCTCACACAGACCCAAATGTAGGCAAAACACCAATGTATATAAAAATAAATAAATGAATCTTAAAAAAAGAAAGAACAGAGTAGGAGAATCTAGAACTCAAAGGATTTGTAGGTTTCTGGATGTTTGCTAAAATACTACTCATTTCCCCCTTTTCAAAACAAACTAAGGCTGGTCACGGTGGCTCACACCTTTAATCCCAGCATTCCCGGGGCAGAGGCAGGTGGATTCAAGGCCAATTGAGGCTACATATAGTGAGACTTTGTCTGAGGCCCCCCAAACCCCTGAAATGCCCTTAAAAATAGAACCAGTTTCAGGTCTGCCTATCATATTTCTCAAACAAGGCAAAGTGGTACACGAGAAACATGCCCACCTGGGTAACGGCAGCTTGGCTGTTCTCCTATCACTACCCTGAATGGAAGAAACCTGACGAAAATACAGTGCCTCATCTAGAAAAGAACCACTCTACCAAAATCAATTACAAAAGACACCAGTACATATTGTTTATTGAGCATTTACTAAGTGATCAATAAGCATGTGTGTATTTAATCAAATAATTCTGTGAAGTCAAGAAACCATTATTTCTCCCATTTGACACATGAGGAAGGGAATCTTAACTGACTTCCATCAAGGCCTTCGTGTCAGTCACTGGGCAGTATACGTCGATGCTCCCCGGGTAACAGCTAGGGTAATCAGTGCAGAAGTGTTAGGTTTTACTGAAACTCTTTCCCTAAGATTCATCTTTATTATTTTTCATTCTGTGTCAGTGTATGTGCCTTCATAGGGGCAGCTGCCCAAGGAGGCCAGAGGCCCGAGATTCCCCGGTGCTGAAGTTACAGTGGTTGTGAGATGCCCAGTGTGGGTTTGGGAAGTAAACTAGGTCCTTTGGGAGGATGGTGAGTTCTTAGGAGCCCTCTGAGCCATCTCTCCAGCCCATTTTGTTTTATTTTTGCTGTGTCGATTTTTTTCATTTTTAAGACAGGTAGCCCTGGCTGGCCATTTAGACCAGGTTGTCTTTAAACTGACAGAAATCTACCTGCCTTTCTTTCTAAAGTGCTAGGGTTAAAGGTGAACAACCACCATACCCTACTCTCCCATGTTTGAGACGAGGTCCCATTGTGTAGGCCACGCCAGCCTCAAACTTAGGCCACCTCGCTGTCCCACCTTTTCCAAATGCCGGGTTACAGCCACTTCCCTAGGGGGCAAATGAGGGGTTTTTTTTGGTTTGGCTTTTTGTTTTTTTGTGACAGATTTTTCTATGTACCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGACGGCCTCGGGACTCAAAGAGATCCTGTCTGGCTCTGCCCCTGAAGTGCTGGGATTAGAGGCATGAGCCACCACTGCCCAGTGACAAGTGAGTTTCTTAAATGCAATCAATTTCTGTTTCCCAG
Seq C2 exon
GAGATACTCCAAATGAGGGAGCACGGGGCTGCAAGGAAGGAGGTGAGAGGCCGGCAGACATTCCTGCTCAGCTGCAACCTAAAGAGGTGGATAAACACAAGACTCATCCCATGGCTACCAAGGCCTCTGCAGGGGCGCGGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGCAGGCGTACAACCTCCTGCTCAGGTACCCAACACAGATATACAGCCCAGCCAGCGACGCCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTACCCGTCTTTACTGATCAGCCACCGTCGCATGCACTCTGGTGAGCGACCCTTCCCCTGTCCAGAATGTGGTGTTCGCTTCAAGAGGAAGTTCGCAGTGAAAGCACATCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGAGGCCGAAGGCCTGGGATCCGGGCTGTGCCTGGAGCCCCAGTCCGAGGAGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATCTTTGAGGAGTGTGGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018379:ENSRNOT00000024858:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.634
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCCCTCATCTCTTGGA
R:
CCACAGTCCACACACACATGG
Band lengths:
352-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]