HsaINT0188125 @ hg38
Intron Retention
Gene
ENSG00000229809 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr16:30569346-30571123:-
Coord C1 exon
chr16:30571010-30571123
Coord A exon
chr16:30570437-30571009
Coord C2 exon
chr16:30569346-30570436
Length
573 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACTTAATTCCGGTTTCCCAGGAG
3' ss Score
5.53
Exon sequences
Seq C1 exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGAAGGGGGAAAGACTGGGAGGAGCTCGGAGAG
Seq A exon
GTGAGGGATAGTCCCGGGTCCCCCCACTTGGTTTTCCAGGGCTTCCTGTCTAGCAGAGTTTCTTTTCAGGCCCCCACTTCCAGCATCCCTAAAGAAATTCAACTGTGTTGGGTACTAGAGGAGTAAAGAAGGCAGACCTGGTACAAAGTTTTCAGAACATGGGACAGCGGTCCTGTGAGGACTGGGAGCCCAGTCCAACCAGGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATAGCCCCTGCTTCCTGAGCACTTCCTAAGTGCTTAACATGCATCTACTCAGCTAAACCAGTAACGCTGTGAAGTCAAAAGCCATTATTATTCCCATTTGATGCATAAGGAACCAAGGCTCAGATAAGGCACTTTTAGGAGATCTGAATCCTGTTTACCTTGTTCTAAAGCCTGTGTGTTAATCACTGGACAGAACTTCCCTCACTGCCTTAAGTGAAAAGCATTCTATAACCTGAGACAGTCTGTGCAAAAGTGTTTGTAAGTGTAACTTAATTCCGGTTTCCCAG
Seq C2 exon
GAGATGTCCCAAACAGGAAGGAAGAGGAACCGGAGGAAGTCCCAAGAGCCAAAGGGCCTAGAAAGGCTCCTGTGAAGGAGAGTCCTGAAGTGCTGGTGGAACGCAACCCTGACCCAGCTATTAGCGTGGCCCCGGCACGGGCACAGCCACCCAAAAATGCTGCCTGGGACCCGACCACAGGAGCACAGCCCCCGGCACCCATACCCAGCATGGATGCTCAGGCCGGCCAGCGGCGCCACGTGTGCACGGACTGCGGCCGCCGCTTCACCTACCCCTCACTGCTGGTCAGCCACAGGCGCATGCACTCGGGGGAGCGGCCTTTCCCCTGCCCCGAGTGTGGCATGCGCTTCAAGAGGAAGTTCGCAGTGGAAGCGCACCAGTGGATCCACCGCTCCTGCTCCGGGGGGCGGCGGGGCCGGAGGCCTGGGATCCGGGCTGTGCCTCGGGCCCCCGTCCGAGGTGACCGGGACCCGCCTGTGCTCTTCCGGCACTACCCAGACATCTTCGAGGAGTGCGGCTGAGCGGCACCGCAGGCTGGAGTTGAGCCTGACCTTGGCACGAAGGACTGACGGATCCCTGAGGTGGGCCACTGAGTCGGGGACTCCGGAACTGAAATTCATGCCCTGGGCTTTCCTCAAGGATCCCTCAAGTTTCCAACTTGTAAAAAGAAAAGTGCCTGTAAAGATTCGAATAGATTAGACTTGCCACCCATCTCCCCAGTCTTTTGTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGAGTGAGACCCTGGACTCATTTCAAAGTGTTATCTGAAGATCAGGTGCAACAGAGACCTTTATATCATCTCAGGAACTAGCCACTCCTTATCTATTTCAGATGCAGATGCTGAGGGGGACCAGGGCCTGGGGAGGGGACCTACATGGAGGGCGTGGTCAAACCCTGGCTAATTGTCATCAGCAGGGGACCCAGACACTGGAGTGGATGGGAGTAGAATAGATGCAGGTGGCACAAATCCAGCCTCTGTTGGGAGACCAAGGAGGGAGGATCGTTTGAGTCCAGGAGTTCAGACCAGCCTGAGCAACAGGCTATCTAGCGATATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229809:ENST00000223459:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.707
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=14.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGAGTGAGGCTTGGAG
R:
AGCAGTGAGGGGTAGGTGAAG
Band lengths:
357-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains