HsaINT0188244 @ hg19
Intron Retention
Gene
ENSG00000213967 | ZNF726
Description
zinc finger protein 726 [Source:HGNC Symbol;Acc:32462]
Coordinates
chr19:24102789-24106517:+
Coord C1 exon
chr19:24102789-24102884
Coord A exon
chr19:24102885-24106234
Coord C2 exon
chr19:24106235-24106517
Length
3350 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTTTTTTTTTTTTTTGAGATG
3' ss Score
4.74
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCCAGACCTCATCATCTGTCTGGAGAAAGAAAAAGAGCCCTGGAATATGAAGCGAGATGAGATGGTGGATGAACCCCCAG
Seq A exon
GTAGGTGAGAGTGAATACAACAGATGACCTGGATGAGAGGTCCAACGTCAAGAAGAAAGCCAGTCTTTAAAGTGATTTGGAAAGCTGCATTCCAAAGGAAACCGTTTCTGGAAAGCCTGAAATTTAAAAAAAAATATACTCTCAGATAGGGGCATCTTCTGCTTATGCTTATAAAATCTCTAAGAATTCTACTCTCCCTTCAATGATCTTCCTTAACGTTTACAGTGACAGCCAAAGTACTGTTCATGGCATATAAAAGAGTGTACAATCTGACTTTTTTTTTCTTGTTTTTGTGGACAGATAGATATCTGCATAGTTTTGAGACACTCTATGTTAAAATTTTTTTTTGTTTTAGAAGGAGTTTCGCTTTTGTGGCCCATGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTGAAGTGATTGTCCTGCCTCAGGCTCCTGAGTAGCTGGGGTTACAGGTGCACACCACCACAACTGGCTAATTTTTTGTATTTCTCGTAGAGACGGAGTTTCATCATGTTGGCCAGGCTGGTCTCCTGACCTCAGGTGATCCACCCACCTCAGACTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTCTCTTTTTGCACAAGAGTAGTGGTTTCTGTTTCATTAGGGGTTTTTTTTTGTTTGTTTGTTTTTCTGCTCATTTCATCCTGTTTTTTTTCTTGCTTTCTTTTTTTTTTTTGTTTATTTAATATGGCCGTTTTTACTTCCTGCAGAAAGGGTATACTCGCCAGCAGTTTTGCCATGAGAGTACACTGAGCAAAGGAGACAGGGTCATTTATAACCTGATGTGTCCACTCTACTGCTGTGTCCAGTTTCCACTGGCTGGAACGGGCATCCTGTTTTCATTACTATAGCCTTGAAATATAGTTTGGGCCATGCGTGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGTGGGTGAATCACGAGGTCACGAATTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTATACTAAAAATAAAAAAATTAGCTGGGCTCAGTGGTGGGCACCTGTAATCCCAGCTACTCAGGTGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGCCAGAGGTTGCAATGAGCTGAGATCATGCCACTGTACTTTAGCCTGGGCGGCAGAGCAAGACTCTCTCTCGATGTATATATATATAGTTTGAAATTATAAAGTATAATGTCCTTCTGCTTTGTTCTTTTTCCTCAAGATTGCTTTGGCTATTCAAAATTTATTGTGGTTTCGTGTACATTTTAGGATTGTAATTTTCATTACTGTGAAAAACTGGAATTTTGACAGGGAGTTTATTGAGTCTAGAGATCACCTTAGATAATATGGCAGTTTCACAATACTTATTCTTTCAATAGAAATAAAATATTTTTAAATTTATTTGTGTCCTCTCTAATTTTTTTATTGCTATATCTTTCACTTAAAAGATTTATGAGCTGCTTGGTTAAATTTGTTCTAAAATTGATTATTTTATTGCTATTGTAAATAATGTTTTTTCCTCTATTTTATCAGAGAGATGGTTTTAAGTGTATGGAATGATAACTTATAATTGTATGTTAATTTCATATTTTGCTAATCAACTGAGTGTATTAATTAGTTTAAAGAGGTTTTAATGTACTTTTTTATATGTAAGATGACATAATCTACAAACAGTGACGTTTTACTTATTGGTCTTCAATTTCAATGACTTTAAATTTTTGTTTTGACTACTTCTTAATTCACATACTTTCAGTGCTATGTTAAAATAGAAGCATTGACAATAAGAGACAATAGTATTGCGTTGGTGTCTGTAAATTTGAAGGAGCAAACACCTCTTCAGAATTTTATAAACTGGTTTCAGAAACTAAAAATCTATTTTCGTTGTACCCCCAGGGTGATAGAATATCCTCTGGGTTTGTAGTGAAGAGGGGTTGTAGCTTGGTCTTAAGTCTGCTGGGTTTGCACAAGGGTCCACTTTTAGTTGTCTTGTTAAACAGGGCTTGGATATTTGTAATTCTCATTTAAATTTTAGACAGAGTGAGTATCCTTCAGGACTTTGCTCTGAAGGGCAGACCCAAGGGCAGGTTTCTGCAGTCAGGTCTGTATATGGTGTTCTTTATATCAGGATGTGGATGAGCATGGCTTTCACCCAGTACAAGAGAGGATTTTCCCAGGTCACTTTGGATTTCTACATAGGCAGAACTGGCCATGAACTGTGGCTCAGGGAGCTGGAACTGAGTCATGGAACTGCTTCAGGGACCACAGGAAAGGCCAAGGTCTGAGGCCTGCCATCATGGCTATAAATGGAGGTCTTCCTCCAGGCCTCTGGAAGGGCAGGACCCACGCTGCCCATTGGCTCCCAAGACTGTGGCTGTGAAGAGTTTGGGATGGTTACAGAGTAAGTTTAAAATTCTCAGTGGAACCAAGTTAGGTGGAGCACTTTCTTGTCTGTAGCCAAAAACAGTGGTCATGTAGTTTGCAACCTGAACGGAGGCCTGCCTTCTAAACAGAATTACCTTGAATCTTGGGCTTTAGCAGAATTTCACAACTCCTTTCCTGGATCTCAGAGCTCTCTTAAAGGCATTTATTTTTGAGATGAGGTCTTGCTACATAATCCAGGCAAGTCTTAATATTTTGACCTCAAGCAGTTCTTCAACTGTAATGTACCATGTAGTTTTCATTACAGGTGTGAACCATGATGCCTGGTTCTCTCATAAAAGCATTTTTGTCAGGAATGGATGACAAATTTTCTTGCTGTCAGGGGATAAGCAAATAGGTCACCTTTTTTTTTTTTTATCTTATTAATGCCACTCTCCATATAAATTTTTACTTTCTATTTTCTACTTCAAATTTGTCTGTAATTTTAGATTCAGACATTTAGGACAATATACTAGAATTTACATGTTGTTCCTGAATTAAATTAGATAATACGCAGGCAGGCAAAAAGGAATTACAGAATTTTCAACCACTTTTGTCAGCCTATAACTAAATAACATAATTTATTCCCCAAATATTTGTTTCACATATGAGGCTCTAACCATATTCTGCTAAATATATATATAATTAAGCAATGTAAGGCTATTCTTTGCTTCTAAACTTGGATTACAGTAGTTTTATTTTGTGTAAAAATAGCATATATTTAAAACATAAAAATTGGCATGAATTTCTTTTAAATGCTTATCTATTAAAAGTTTCTCATTAGCATCTCCTATTTATGATTGTACTGCATTTTCTCTGAAATTTTATTGCCATACAATAGATGCCAGTAATTTTTTTTTTTTTTTTTTTTGAG
Seq C2 exon
ATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGTGCCGACACCGCGCTTGGCTAATTTTTTGTATTTTTAGTAGAAACGGGGTTTCACCGTGCTCTCGATCTCCTGATCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGATGCCAGTAATTTAAAATGCCTGCCTTCCATGAATGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213967-ZNF726:NM_001190829:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)