HsaINT0188281 @ hg19
Intron Retention
Gene
ENSG00000169955 | ZNF747
Description
zinc finger protein 747 [Source:HGNC Symbol;Acc:28350]
Coordinates
chr16:30542779-30546194:-
Coord C1 exon
chr16:30545518-30546194
Coord A exon
chr16:30544473-30545517
Coord C2 exon
chr16:30542779-30544472
Length
1045 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
3' ss Seq
CTCGCCTCCTTATCTTTCAGCAG
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGTCGCGCTGCCGCCGTTTTATTTGAAGACATCGTCCAGTTCTGACCATGGACTCGCAGCCATCGGCCCTTAGTTTCCATCCCCTCTAGTGGGCCTTCGGGGGCTCTACTGACGTCCCTCCTTCCCTTGGTACCGGGCCGGGGAAGTGTTCTCGGGCGCGGGAGGTTCCGCATGCCCAGGCCTGGCCAGGGGAGATGACCGATCCGTCGCTGGGGCTGACAGTCCCCATGGCGCCGCCTCTGGCCCCGCTCCCTCCCCGGGACCCAAACGGGGCGGGATCCGAGTGGAGAAAGCCCGGGGCCGTGAGCTTCGCCGACGTGGCCGTGTACTTCTCCCGGGAGGAGTGGGGCTGCCTGCGGCCCGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTACGGCCACCTGGGCGCGCTCGGTGAGAGCCCCACCTGCTTGCCTGGGCCCTGCGCCTCCACAGGCCCTGCCGCGCCTCTGGGAGCTGCGTGTGGAGTTGGGGGCCCCGGGGCCGGGCAGGCGGCCTCCTCGCAGCGTGGGGTTTGCGTTCTTCTCCCCCAGGAGTCGGAGGCAGCAAGCCGGCGCTCATCTCCTGGGTGGAGGAGAAGGCCGAACTGTGGGATCCGGCTGCCCAGGATCCGGAGGTGGCGAAGTGTCCGACAGAAGCGGACCCAG
Seq A exon
GTGGAGTATCGGGTGCTCAGTCCCATGGGGACTTCTCTGTTCCTGTCCCATCCCGGTACCCTCTGCCACCTCCAGCTACCTGCTTAGCAGTTTCCTCTCTGAACTGCCTCCTCAACTGCGGCCAGGAGGCTGAGCCCCTGCCTGGCTCCGGGATGCAGCCTAGAAAGGGGCTGTGATGGGGGCTCTGGCCCTGCCATACCCGCCCCTGAGTCCTCACCTCTGCGTGGTCACTACACTCCGGGGACTTTTTTGTTTTGTTTTGTTTTAGAGACAGGGTCTCTGTTGCCCAGGCTGAGGTGCAGTGGCGCCATCATAGCTCACTGCAGTCTTGAACTCCCGGGCTCAAGCAATCGGCTCAACCAATCCTCCCGCGTGGGCCTCCAGAGTACCTAACACTGTAAAGGCACTCGCCACCACGCCTGGCTGGTTTTTTTTTTTTTTTTTTAATTAAAAAAATTTTAAAGAGGTAGAGGTCTTGGTGTGTTGCCCGAGCTGGTCTCGAACTCTAGCGATCCTCTATCTCGGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCACTGCACCCGGCCTCTAGGTTCTGTTGACTCTACCTCCACATCATGACCCGCTCCAGTCGTTTTCCTGCACTATGGTTCCTATGCCCCCACATCCCGCCCTCCCATTTCCTTCCTTTAGTTCTTGCCTCAGCTTTTGCAGAGTATCCAGCCCCACTGAACTTGGCCATGCCCTCCTGGTTCTGCCTTTCTTGGTGCTGTTCCTTCTGCCTGGAATATCCCCAGGTGTCCGCTTCTTATTCCAGATCAGGCCCAGATGTTCACGTCATCTCTGCCCTTCCCCCGCGGTGACATTTCCCCAGCCCGGAGGCGGAATGGACTGTTCCCTCCCTCCAGGCTCTGTCTGGCTCTGCAGCCGAGGAACAGGTGTCACTCCTCCATCTCCTAGGAGCAGTCGGGGGTCCAGCAGGCCTGTCCCTGTCCACGCGGGCTGTGGGATTCAATGACCAGGATGAGCCAAGCCTGAACTCTCGCCTCCTTATCTTTCAG
Seq C2 exon
CAGATTCCAGAAACAAGGAAGAGGAAAGACAAAGGGAAGGGACGGGAGCCCTGGAGAAGCCCGACCCTGTGGCCGCCGGGTCTCCTGGGCTGAAGGCTCCCCAAGCCCCCTTTGCCGGGTTGGAGCAGCTGTCCAAGGCCCGGCGCCGGAGTCGCCCCCGCTTTTTTGCCCACCCCCCTGTCCCCCGAGCTGACCAGCGTCACGGCTGCTACGTGTGCGGGAAGAGCTTCGCCTGGCGCTCCACACTGGTGGAGCACATTTACAGCCACAGGGGCGAGAAGCCCTTCCACTGCGCAGACTGCGGCAAGGGCTTCGGCCACGCTTCCTCCCTGAGCAAACACCGGGCCATCCATCGTGGGGAGCGGCCCCACCGCTGTCCCGAGTGTGGTCGGGCCTTCATGCGCCGCACGGCGCTGACTTCTCACCTGCGCGTTCACACTGGCGAGAAGCCCTACCGCTGCCCGCAGTGTGGCCGCTGCTTCGGCCTGAAGACCGGCATGGCCAAGCACCAATGGGTCCATCGGCCCGGGGGCGAGGGGCGTAGGGGCCGGCGCCCTGGGGGGCTGTCTGTGACCCTGACTCCTGTCCGCGGGGACCTGGACCCGCCTGTGGGCTTCCAGCTGTATCCAGAGATATTCCAGGAATGTGGGTGACGGCCTAAAAAGTGACCATCTAGACATTGTGGGCGGCCCGAGATGGGCTCAGGGGCCCGAACCTCTGCAGCGGCCTGCAGGGAGGTCCCAGAATCCACCGCAAGAGCTGGCCTGGGGTGCGGACAGTCTGATCTTGGGCTCTCAGCAGCCTCTTCTGCCAGCACCTTGCTCCCCGCTGCCCTGGGCTCTCCAAGGCCCCCTTTGCTGAGGCAGGGCTGAGGTGAGAACCCCCCAGACCTCCATACAGGGAAGCAAAAGCTGTTTCTCCTCCCAGAGATGCTAAGAGGATTGAGGTAGAGAAGAACCTTGTTTTCTCTGTTGTCTTTTTCTTTTTACTTTTTTAATTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGACTCACTGCAACTTCCACCTCCTGGAGTCAAGCGATTCTCCTGCCTCAGCCACCCAAGTAGCTGGAATTACAGGCACCTGCCACTATGCCCGGCTAACTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCTAGGCTGGTCTCGAACTCCTGCCCTCAGGTGATCCACCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTCACCTGGCCTTTTCTTTTTTATTCTTTGACCTTCCCACAAGACAATACCCATTGTCTGTTTTTTTTGTTTATTTATTTACTTATTAAGACAGCATCTTGCTCCTCACCCAGGCTGGAATGCAGTGGTGTGAACTGGGCTCACTGCAGCCTAGACCTGCTGGGCTCAAGGAATCCTCCTGCCCCAGCCTCTCAGATGGCTGTGACTACAGGTGGGCAACACTATGCCTGGCTAATTTTTAAATTTTTTTGCAGAGATGGGGTTCCCACTATGTTGATCAGGCTGGTCTCAAACTCCTCGGTTCAAGCAATTCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGGGAGCCACTGCACTGGCCTTCATTGTCTTTTTGCTGCACAACCTAAAAAACCAGTGACCCTGTATTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169955-ZNF747:NM_023931:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=NA C2=0.967
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=25.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCCGAACTGTGGGATC
R:
CCCTGTGGCTGTAAATGTGCT
Band lengths:
345-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)