MmuINT0179814 @ mm9
Intron Retention
Gene
ENSMUSG00000054381 | Zfp747
Description
zinc finger protein 747 [Source:MGI Symbol;Acc:MGI:2443581]
Coordinates
chr7:134516051-134519016:-
Coord C1 exon
chr7:134518903-134519016
Coord A exon
chr7:134518213-134518902
Coord C2 exon
chr7:134516051-134518212
Length
690 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
TTTTCATGGTCTCCCAGCAGATT
3' ss Score
8.43
Exon sequences
Seq C1 exon
ACGTCGGATGCGCCAAACCAGCGCTCATCAGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCGGTGCCCAGGATCCAGAGGTGGCCATGTGCAGGACAGAAGTCCACTCAG
Seq A exon
GTGAAGGACTGGGTACTTGCCTGGGGAAACTTCTGTGTTGCCAGCCTGTGTGGTGTCTTCTAGTGACTGCACTTACTGCCTGGCAGTTTCTTCCCTGTTTTTGTTTCTTGGCCAAAGCCATGATGGCTGGCCCCTGGATTCATCTAGAAAGGGGCTGTGATTGTTCTGTCCAGTGCTCTCACCTCGTATATACAGGGCCACTAGGCTGTACGGGTTGTAGCCCCTCGTTCCCACTCCTCTGCTGCCATCACTGTGGCTGCCTTCTGGAGTCTCCTTTAGCTCTTGCTTTCCACCTCTGAGAAGTGCTTAGCTTACTGCACTTGGGAATTGGGACCACACAGACACCTTTCTTTTCTTTTCAATTCTTTTCCTTTATTTTTTATTTTTTATTTTTTTAGAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCAAGCCGAGGCCCAGACCCCTTTCTTTATGCTGCATTTGGACATCTGCACACTGCACATGCTCAGATGCTGTGACATCTCCACTCCTGTGTCCAGTCTGTCCCCTTGTGGGGCTGTGGAAATTAAGGGGCAGTAGAAGTCAGAGTCTGAGCTTTTTTCATGGTCTCCCAGCAG
Seq C2 exon
ATTGCAGGCACGAGAAGGAAAGGAAGAGACCAAGAGAAGAGACTGAAGCAATGCAGAAGACATTTTCTCCAGAACCTGGGCAGAAGGAGCCACAACTCTCATTTGCTGTCTCCGCTAGTGGAATTCAAGCCACGGTCCTAAGGGCAGACAAGCGTCACGGGTGCCATTTGTGTGGGAAGAGTTTTGCCCGGCGGTCCACGTTGGAGGCACACATGTACACTCACACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAAACGATTTGGCCGGTATTCTTCCCTGAGCACTCACCGAGCCATACACCGAGGGGAACGGCCGCACCAATGTCCTGACTGTGGGAAGGGTTTTACCCAGCGGTGCACTTTGGTGGCACACATGTACTCTCACACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAAATGCTTCGGCAGGTATTCCTCCCTGAGCATGCACCGAGCCATACACCGAGGGGAACGGCCACACCAGTGTCCTGACTGTGGGAAGGGTTTTACCCAGCGGTGCGCATTGGTGGAGCACATGTACTCTCACACAGGCGAAAAGTCATTCAATTGCCCTGATTGCTGCAAGTCCTTTGGTCGGCCATCTTCCCTGAGCAGGCACCGGGCCATACACCTCGAGGAGCGGCCTCATCGCTGCTCTCACTGTGGCAAGACTTTTACACAGCGCTCTTCACTCACCAGCCATCTCCGTGTCCACACTGGGGAGAAGCCTTACTGTTGTGCTGATTGTGGACGCTGCTTCAGCCAGCGCTCTAGGCTCCATGAGCACCAGCGAGTGGTACACAGCGGTGTGACCCCCTTTTCTTGCACTCACTGTGGCAGTGCCTTTGCGGATTCCAAATATCTTCGGCGCCACATGCGCATCCATACAGGTGAGAAGCCTTATTCATGCCCTGACTGGTCGCTGCTTTCGCCAGGGCACCGAAATTCCAGCCCATAGGAGGACCCACACTGGCGAGCGTCCTTACCCCTGCCCTCAATGTGGCAGGCAGTTTCGCACAAAGTCAGCTATGACAAGCTACCAGTGGGTCCTTAGACCAGGATTAAAGGCCATAAGGACAAAAAAGCCAGTCAGTTATCTATATCCCTGGACCCTAGACAAGAGGACCCGGATCCACCTGTGGGCTTCTAGCATTACCCAGAGTTATTCCAAAAGTGCGGGTGATGGTCTTAAAGGCGCCAACATAGAGGGTGAAATATGTACATTGTTTGAGGCCCAGAGGATTGAACCTATGGCATCTTCCTGAAGTCACAGACGTTCTAGGTACTGCTGGTCTGGGCACCGGGTACAGTCTTCTAGGAGGTTTCCAGATGCATCTGCACACACTCCGGATGTACTGTCGTCTTGGCGTCTATTGGGCTGGGCTGGGCTGGGCAACCCCACTAGAGCTCCATGAGAAGCGAGGGCCTTTTCCTGGCTCAGAAGTATTGAGAAGCCTGAGGATGAAGAGAGCCTCGTTGAAGTCATTGTGTCTTTAATGCAGAGGCTAAAGTTGATGGCTCTGTGTGGGTTGAGCCAGCTGCATTCTCCGGGATTGAGTTACTGGTCAAGAGCCTGGTGTGGTGGTTCCTGCCTGTGATTCCCCCACTGGGGAGGTAGAGACAGGAAGACCAGGAATTTGAGACCAGTTTGGGTCACCTGAGACTGCATATAAACATAAATAAAATTATTTATTTCTAAATAACTGTAATTAATTACGGTTTAAAAACCAAAGTATCTATGACATGTACCAAAGGCCTAAGTTTGTAGGTTCTCTGGAAAAAATCCAAAATATTCAGCCCAGCAAACAAGACAGAAGAGTTCTGTGGTCCATTCTCAGCATTCCATACACTGTGTGTGCCGCCACATGCTTGCTTGCAGCACTTGGTAGCTGGTGGCACAAGGATGTTCAGAACTTTAAGGCTGCCCTCTGTCACAGACAGACAGACAGACAGACACACACACACACACACACACACACACACCAGTTTCAGATCAGATTATGGCAACAGCCCCCATGTCTTGATTTCAGCGTTGGAAGGAGAGAATCAGGTCTGGAAGACAGTGGATTTTAGGATTTTCTCAATCAAGGAGGGCTTGTATGAAATTGGATGGCAAAGAAGGAAAAAGAAATAAAGAAACAAAAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054381-Zfp747:NM_175560:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF0136316=FYVE=WD(100=23.5),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.3),PF0128613=XPA_N=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTGGGTGGAGGAAGAG
R:
TTGCAGTCTGGGCACTGAAAC
Band lengths:
347-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: