HsaINT0188349 @ hg19
Intron Retention
Gene
ENSG00000152439 | ZNF773
Description
zinc finger protein 773 [Source:HGNC Symbol;Acc:30487]
Coordinates
chr19:58016025-58016768:+
Coord C1 exon
chr19:58016025-58016154
Coord A exon
chr19:58016155-58016669
Coord C2 exon
chr19:58016670-58016768
Length
515 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCACCTGTCGTTTTCCTTAGGAC
3' ss Score
12.47
Exon sequences
Seq C1 exon
CAGGGCTATGTGACCTTTGAGGACGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
Seq A exon
GTAAGGTTCTCACACCCCACCCCAGCATCCTGAGCTGGACTTGGCTTTTCCTCCTTTTCCTAGGGAGAGGTCTGTTCTTCCCAAAGCTGAACTGTGGGCACTCATTCCTTCTCCAGTATCCTGAAGTAGCTATTGTAATAGGCCTGGGCTGTGTATACTACCACCTTCTCTCCCTGAGCTGCCCCACAGCTGTGCAGGAAAGGGTTTGGGGGTCAGGAGTCTTGCAGTCAGCTTGATGGATCTTATCCCTGGTGGCCTCTCTGTGGCCTGGTGACACTGTGCAGATCTGTGGTAGTTCTATTCCCCTACATTCTGCCTGTCTCCTCTAGCCAACATACCTGGGTGTCGGTCTGTGCCAGCAATTGAGTCACCAATGTGATTGCTGTTTGACTGGGTTGTTCCTGCAAGACCCTCCTCCAAGGTTCTTTCTGTACTATTTTGTTTTCTTTCCTGTGGTCCATGATGAGATAAGTCATTCTGGCTCAGTGCTGCCACTCACCTGTCGTTTTCCTTAG
Seq C2 exon
GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152439-ZNF773:NM_198542:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACCTTTGAGGACGTGG
R:
AGTCACAACTTCCCAAGCAGG
Band lengths:
206-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)