MmuINT0179844 @ mm9
Intron Retention
Gene
ENSMUSG00000063535 | Zfp773
Description
zinc finger protein 773 [Source:MGI Symbol;Acc:MGI:1923623]
Coordinates
chr7:7086878-7088129:-
Coord C1 exon
chr7:7088003-7088129
Coord A exon
chr7:7086962-7088002
Coord C2 exon
chr7:7086878-7086961
Length
1041 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TTTCCTTTATTTTACATTAGGAC
3' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGGTATGGCCTTTAGTGATGTGGCTATCTACTTCTTGAGGGGGGAATGGAGACTACTTGATGACTCTCAGAGGCGTCTGTACCACCAGGTGATGATGGAGGTCTTTGTTCTCATGTCCTCATTAG
Seq A exon
GTAAGCTCCCACCCCACACCCATTCTGTAAGAGCATCCTGTCTGGGTGGGCATGGCTTCTTTTCTATACAGAGACGTCTCCTTCCCAAATCTGGTCCATGGGCATTCATCCTTTCCCCAGTGTCATGGATTGGGAAGTACAGGTGAGAGACCTGGGCATGGTACACTACCATCTTCTCTCTCTTATATAGCAAAGACACAAAGGAAGCAGCCTGAAGTGAGGACTCTTATAGTAGTTTAATAGACTTCACACTGGTAGCTTCTCCATGGCTGGAGACATTGTAAATACTCTGTCATTCTCATGACCCAGGTACTCTTCTCTTCCTGTAGGTGACTTGGGTCAAGTTGTGGCACTGATATGGATACTACTTGGTGGGTTTTCTTGCAAGACCTCTCTATGGGTATCTTAGAGTTTCTATTGCTGTGAAGAGACACTATGACCATAACAACTATTTTTTAAGATTTATTTGTTTATTTTATGTATATGAGTACACTGTAGCTGTATAGATGGTTGTGAGCCATCATGTGGTTACTGAGAATTGAACACAGGACCTCTGTTCACTCTGGCCCCTCTCCCTCCAGCCTAAAGACTTATTTATCATTATATGTAAGTACACTGTAGCTGTCATTAGACACACCAGAAGAGGGCATCAGATCTCATTATGGATTGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGATCAGTCAGTGCTCTTAACCACTGAGCCATCTTCCAGCCCAACCATGGTGACTCCTATAAAAGAAAACACTTAATGGGGGGCTGACTTGAAATTCAGAGGTTTAGTCCACTGTCACCATGGTGGGAAGCATGATGGCATGCAGGCAGATACGATGCTGGAGAAGTAGCTGAGAGTTCTACACCTGAATCTGAAAGCAGCAGGGTGAATGAGACACTGGGCCGACAAGGGGTCTTTGTTGTCAGTTTTCATTCCTGTGGATTGCATGAGTTACATCACTCTGTCTGAGCATGGGACATTCCCCTTTCCTTTATTTTACATTAG
Seq C2 exon
GACTTATACCTTCTGGGACTGACATCACTCAGCTGGGGTCTTCAGGAAATCGCTTCATCCCTGCCCTGAGATTTTTGACTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063535-Zfp773:NM_029584:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTATGGCCTTTAGTGATGT
R:
AGTCAAAAATCTCAGGGCAGGG
Band lengths:
207-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: