HsaINT0188354 @ hg19
Intron Retention
Gene
ENSG00000196456 | ZNF775
Description
zinc finger protein 775 [Source:HGNC Symbol;Acc:28501]
Coordinates
chr7:150076406-150085589:+
Coord C1 exon
chr7:150076406-150076481
Coord A exon
chr7:150076482-150085509
Coord C2 exon
chr7:150085510-150085589
Length
9028 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCTGCTTCTCTTTCTGACAGATG
3' ss Score
11.71
Exon sequences
Seq C1 exon
GGCCAGGGCCGGGAGCCCGGTGCCCAAGTCGCCCTCGGGGTGGCAGTTCCCGTTAACCTTAGCCACAAAGTCAAAG
Seq A exon
GTATTTATTTCCCCGTCGCCTCCCTCCGAGTCCCTCTGCATTTTGGGCGGGGAGGGGCGGTGCGAGGGATGGACCAGCGCCCGGCCCCGCTCCTCCCGTGCTGCCTCCGCCCGGCCCGGGCTGGGGCGGAGGGATGGGGCGGGGGCCTGGGGTGCCCCGAGCCCCGCGCGCCCCCCGAGCCCCGGGTCTCAAGCGTTCCCTCTGCCCCGACACAGCCGAGGGGAAAGGGGCGCGGCCGAGGGTGGGGAGGGCGCCAGGCCAGGGCAGCGAGGTTAGGAGGGAGGCTAGTGAGAATGGAGGGAGGACGCGGTGGCGAGTAGAGGGGTCGCCCGCGGGCGGTCTCTCCTGGGCTGTCCCGTTGTTCCGAGTTCCCCGTCCCTGTTCGCCTCCCTGATAGATCAGTTTCTGGGGGCAGGAACCCCAATGCTCGCTGCAGAGTGACAGACACATAGTAGGTGACCAATAAATGTGTGATTAAACGAGCGGGGATAAGGATTGGGGGTGGAGATAAGTGAGAGGGAAGCACCGCAGAAGTTGGAAGTGTGTGGTGTCGGGTGTGGCGGAGAACTCCTCTCTAGGAAGATGGGCACAGCAGCCGCGAACTCGGTGGGGCGGGGTGCGGGCATCCCCTCTGTGAAGAACGTTGAGGATATCTACATGTGGAAGGTGTGGAGATGGGTCCTCCTTCGGCCCTTTGAGCAAGATGATCTGAGCTGGGGCTGGGTGTGGTCAGAGCCCCAGGGGTTGGAGGCGGACGACAGCCCAAGGCTTCACAGCTAACTGTTCCCATGTTCATCTGTAAAATGAAGAGATTAGATGGCAGTTGTCTCCTTTCAGCTTGAAGGTTCATGCTTCCGTGCTTCAAATCTGTTTTGTACTGAAATTTCTTTTATTTAAGTGTTCCCTTATGACAGTTTTTATTAATGGATTACTGTGTGTGGAGCCTGTACTGGGTGCAGGGGAGAGAGAAGGACCCTGTGTTAAGATGCATGTAGTCTTGTGCAGACTAACAAATTGATGACAATGATGATTCCATGTAGATGGTCCTAGGTGCACAGGTTAAACAGAGAAGGGATTCCTGGCTGTGCCTGGTGTGTCCAAAAAGGCTTCCTGGTCAAAGCGATCCCTAATCTGGGCTGGGAAGGGGAGAACTGAGCAAGGGCCTTCCAAGGTTGGTCACAGGGTGCGAGGACACGGTGAGTTCAAGAGCCACGAGAGGATGGGGCGTGTCGGGGTGCAATGGGGAAAGATGAGCAGAGTTGAGTTCTCAGTTCCCTCTTATCCGAGGTGTGCGTGCCAGCAAGTCCATTTGGTGGGGGTCTGGGTTTCTGAAAAACAACTCAAGGACATATGCTAAGATGTTACCTTTAGTTTCTTTAGGCAACCACACGTTTCGTGTGGTCTGACTTCCTTGCTATTATTTTAGCTACGATTACCTTCTTATCAGGTTGCACATTTACTTCTCAGGACCAGCTAGGTGCCTGGAATTTCCCTGGAAAGAACTCAAGATTTTCCTTTATTTTCATGATTGGAGGGCACAGCAGGTGCCTGAAGGGGTCCCTGCTCCATCTCACTTTGCTTTCCCAAGGTCCTTTGAATGCAGCAAGGGATGCAAACGTGTTTATTAATTAAAATGTGACACCTCTTCAGAGATTGTTAGCAGCTGGGTTTATCCTCGGCCTTCAGCTCAGATGCAGGCCCTGACAGGTTCCTGAATATTAGAATTGGGGCCGAGGAATGTAAGTGCAGCTCTCGCCTCTGAAGGGAGGTGGGTGAGGAGGAGGGGGCCAGGGGTGTGGCGCAGGGGAGGTGTGGGTGGGACAGTTCCAGCAAGCGTGTTTACCTCTGGCCGGTGAAGGAAGTCTTGGAAGGAGGTACCTCAGGATCATGGCTGGGGTTGAATTGGGGACCTCTGGGAGGTGGGCAGGCATAGTGGATAAGGCAAGTGACCTGCTTGCATGCAGATCAGGTCTCCTGGGAATGTCGAGGGGAGCAAACTGAAGCCATGAAACCAGGCTGGCTGTTCATACCCTGAGGTACAGTTCTTATAACCCTGAGTGGGGAGCGGGTGATGGCAACAGCAACGACCTAAATCGAATTTGTCTTGCACCTTGGGAATGTCTCTCAGAGTCCTCTCACACTGTTTGCGTCCCGCCATCCCCACCCCCCACCGCCCCCGCCCCACTTGATATAACAATTCTGTACCACGAGCAAGCGTTATTTCCATTTTCAGGTGGGGAAACTGAGGCCCAGAGAAGGAAAGTGGTTTGCCTGGGATCATGTGGCTAACCAGAAGCAAACCCAATCTCAGTCCCTGTCTGGGGCCTCTCAGCGGCTTTTTCCACTATGGCCTGTTCTTTGGGTTGGACAGTGGCCCGCCCTTTCCCTTGGCTCCCCTCCTCTGTTCCCTCCCCAGATTGAGGACTGGGGTGTTTGGGAGACTGAGGTCTGAAGATGGTGGAGTAGGAAGAGGGGAAGGGTCAGGGCTGGGAGAGTGGTCACAGTGGGGGTGGCCTTGTGCTGAGTGGGATCCGGGAAGTTGGAGAGGAGCAGGGTGGGTCATGGGGGGTGGGACAGGGGAGTTGTGGGAGGCTTCAGGGTGCCTGATGCTGGGTGTGGGGATGGAGGCCTCCAGGTGGGGGAGGGGATGCCCACCTGGTTTGGGCTGGGACCTCTGGGAGGGGCATGCAGAACCACCCTGGTAAGTGGAGGGCTCTGCAGACAGTGCCACAACCAGAGCCGTGCAAACCCTCTTCCTCCTGCATGGTGGAGCGTGGAGGCTCCTGTGTGGCGCTGGGGGCCTCTGAGATTCCCAACTGGCTGGAAGGAGTGATGGCTTAGGAGGAGTGAGTGGCAGCGGGGACGCTGGCAGAGAGGCTTGTACAGATACTGCCCGATGCATCCGGCTCAGGCTTGCCGCCCTGTGGTGCTCCTCCCAAACTCAGGGAGCAGGTATTTCCGTTCACCTGCGCCTTCAAGAACCTGAGCTCAAAGCGCTGCAATGACTGGCCAGGGACTAGCAGCGGCTCAGTGGTGGGTGGGCTGGGACTTGGGGTTCTTGATTAAGACATGGGGTCCTGAGGGGAGGGACCAGGAAGGGTGGCCTTGAGAAGGACATCCCTGCCAGCCTCAGGCAGTGGGCTTCTAGGGGGAGACTAGGGCTGAGGAGCCAGCCAGGTGGCGGCTGAGGGTCACCCAAAGATGGCTGAAGGGGAGAGGGCCCGCTGCATCCCCTTGGGCCAGAGCCCACAGGCCAGGCCCTGAGGATCTTAGGCTGCACCAGGCTTGCCGGACACAGGCTCATTGTCTCTAGGGCTTTCTGTCTTGCTGTAACGTCTCTCCAGCCAGCTGCAGCTCCTGCTGACTTATCCCACCCCAGCGCAGGTCATCCAACGGTGACTTATGGCCCCGGCCTCCTGGCTCGATGAGGGTATGTTGCTTCTGTTTCTACCTCTCTGAGTTCTTTTCCTCGGAGCAAGTGACCCTGATGGGATGGCCATGGGTGTACAAGGATACTTGTGTCATGGGTGGCTTTGCAGTTCTGTGTTCCTAAGTGTGCTGTGCAGTGATTCGTGCTGCCCTGGTTCACAGTGGCACGTTTGTGTGTCTGTGGATCTGTAGGTGTGTCTGTGAGTTTTAAAAAATATCTCACATTCTCTGTATTTGCATAGACAGTTTTGCAGGTGTTCTCACGTAGTTTTGTGTCTTTGAACTTTTGTTTACTTAGCTGTATTTAGATATGATTGTATCTGGGTGTGTTTGTGTGTGGTTTAGCATTTACATCAGTTTCTTATGTCCCTATGATCATATATTTAAATTAAAAACATCTGCTATTAACTGAAATCAGAGGCAGAGAATACCATTGCCTGGTCCTGAGGGATTTCTTAATAGTGACAGAAGACTGGAGCCTGAGGAGCCACCTCTTGGGTCCTCCATTGTTTCATTCACTCATCCGTTCATTCATTCAATACACATTACACACCTTCTGCATATGAGGGACGCGCAGGTGTGGGAGCAAGCCCCCGCTCCCTGGGGCTAACCTGAGTGAGGGGTCTCACAGGGAGAGAGGACTGGGTGAGGACATAGCAGTCAGGTATGGGCTGCAGGAGGGCAGGGAGGCGCTGGGGACCCGGTGGAGTTGAGAAGGATGAGGCTATAGAAAGGGGCAGCATGGCAGGGAGGCATTGGCTGGGCATGGGCTGGGACTGGAGAGGCCAGTTTCTGTGGGGGTCTCCTATGGAAGACCAGCTGAGCTGTGCCCAGCAAGTGAGGACCTGCTGGGACCTCAGGGCTGAGAAGGGCCTGATACTGGGCCTTTGGCTGGGGTTTGGGGAGCTGCCCCCACCCCCAAAAGCCTTAGCGCCTAGTGGCGGATCCTGCTCCCGCTCCACTAGCAGCAGATGATACCTGTGGCATGGTCTGCTTCTGACTGCCCGACCTGGGGCGCTGAGGCTGTGAGAGCTGTGCTGGGCTGGTGGGAGGTTCCAGGGGCGGCGATGGGGAGGACCTTGCCTCTTTCTGGCCTGTGGCCTTTCTCCTCCCCCAGCTGCTGTCTGGCCGCCCCACCCCCAAGTCTCTGCCACAACCAAAGCTCCTTTGTTGCCTCCCCCTGCCCCGGGCCTCTCCACCTGCTGCTAGCTCAATCCCCTCTTTGTGTGGTTGGTCTTCAGTTGTCATGGCAGCTGGGCCCAGGCTGAGGCCTGCCCACTGTGAGGCTCTTAACTGAACTGCAGCCTGACCCGGTGCGCGGAGGGCCGGGCCAGGGCCAGGCGTGGGAAGGGGGCCCCTGTGTGTCCTGCTCCCCTCAGAGCCCGAGGGGCAGCAGAGAGGAAAGGTGGTCCGGTAGGGGCCCGGGGGCCCTTGTGCGATAGACAAAGCGGCCTTCCAAGACTTGGTGTGGGCACTGGTGGGAGATGGCGCATCTGGCCCTTGATGCCTGTCTTCCAGCCGGGGCGCTTTGCTGGGCAGCCTGCTCACCTGGCTCCTGGGTGTCTCCAGGTGGCTGAGGACATGTCAGGATGGTAGGTTAGGAGGGGCCCGCCATGCACAGAGCAGAGTGAAAGGCAGAATAGGAGAGAAGCTTAGGGTGGGGACGTGTGTGTCTGGCCAGCCTGGAACATGACACATGGAGGGCTTTCCTGGATTTTGTCTGTAGGACACCTGCTGTGCCATTTCCCAGACATAGCCCACCTGAGCACACAGGTAGAGGCGGGTCCCCAAAGACTTGGCCTCCCCTCATTCCTGTCCTCTGTGTTTCCCCCTTTGAATTTCTCACTTCTTCCTCTTGGGTCCTCTTCCTTCTGTCTCCATTTCTGTTCTTACGTAAGCCACAGGCTGCTTCCCCTCGAGCCCTGGTATGGCCCGAGACAGAGGCACCGAGGCTTGAGGGAGGAGCTGCTCTGGGAGGTCCCGGACAGTGGAAGGCCTGCTACTACCTGGAGTGGCTGTTAGGTCCTAATACCTCTTGGGAGGCAGGGTGGGTGAAGTAGGACTGTCTTTGATTTGCCTTGGGGGTCTCGCTCTGTGGAGACCCAGGCCCATCCTTCTGTCCTCCTGAATTTGTGGCCTGGGCTCTGCCCTCCTCGGTCTGAGTTCCCCTTACCAAGGTGGCTTCTCTGTCCACTAGCCCCTCTGCGCCTCTTCAGGTGGATGTTAAGTCCAGTTGGTGAGAGGTTTCCCAAGATGTGGCATGCAGAAGCTCACAGAGTGGCCCCAAGGGAGGAGGGTGGCGAGGGAGGGAGGAGCCCCCAGCACCCATCAGAGCCCCACCAGGGGCTCCTCCCGCCCCCTTCCCCACTGCTCGCCTTTTCTCTGCACCACAAGCAGGTTCTGTAAGAAACCATGGTAGGCATGCGTACAGGCCCCTGTTGGGGAAATAGAATTGAAAACAAAATCTCTTGCCAACCCAGAAAAGCTCTTTGCAAAAGTAGAAGAGAAAAACAGCTTTTAAAAGATTGAATGTGCATGAAACCAGAATGTGGTGCGCACCATGGACAATCCCCCGAGCAACTGCAAAGACGGGAGCTCTGAGCCTGCAATACCCCAAGCGACTGCAAAGACGGGAGCTCTGAGCCTGCAATACCCCGAGTGACTGCAAAGACGGGAGCTCTGAGCCTGCAATACCCCGAATGACTGCAAAGACGGGAGCTCTGAGCCTGCAATCCCTGAGTAACTGCAAAGACGGAAGCTCTCAGCCTGCATGTAGCCGGCAGGTGCAGCCCGTTACAGACATGTTCTCAGGATAAACAGCAACCAGCCCTCCAGCAAGAGGACTGGACATTACCATTTGTCACACGCAGGCAGGTCGTCCTAAATTCACCTCATAATTGGAGTGACCATCTGTGTTAGCTAATTGCCTTTACCCACAGGAAAAATAAAGTTCTTATATTTTTATGACAGGAGATAGTTTTGTGATTTGGAGCCAGGCACCTGCTGAAATTAGGCTCCTACCCTCCCATGGAGACTGGGAGGCAGGGGTGATGTCTTCCTTGATACTTAAATTTCAAAGAAATGGCCCCCAGGACCTTGGGAAAGACAGTCCTGGGTTGTAATGTTGGCAGAAGGCTTATTTAGCTTTTTTTTGAGACAGAGTCTCACTCTGTCACAATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAACAATTTTCCTGTCTCAGCTTCCCGAGTAGCTGGGATTACAGACATGTGCCACTACACCCAGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCCCCACGTCGGCCAGGCTTGTCTCAAACTCCTGACCTCAGGTGATCTACCCACCTCAGCCTTCCAAAGTGCTGGGAATACAGGCATGAACCACCGTGCCCAGCCTTATTTAACTTTTAAAAAGATTTATTTCTACTTGAGGAGCATTTACTGCAAAAATAAAAAATAAAGATTCACATGCATCTCAAAAAGACAGAGATAGAGCTTATTAATTAGAAGTTTCTAAACAAAATGCTCTTGAAAAAAGTGGGTGTCTCTTCTTCTCTTTGCACCAGGGAAAATGACTTTCTGCATTTTCTAGATTCATATTCACCCCTCCCCCGACGTCTCTTGTCAGGGTCCAGATTCCCAGTCTGTGTGTGTGCCCCCAGTGTCTGGGCTCTGAAGGGGACCTAGGAGAGGGAGTCTGGGTCTCTGCGAGGCTCTCGGGCCCTGGGGTGGGTGTTTCTGTGGGGGTGGCCGAGCCAGGGTGCCTGGGAGGAGGGGCTGACTGAAATCTGGAAGAGCCCCTCCCTGAGGCAGCAGGAAGGACGAGCTGTGCATCTCTGTGGGGCAGCCACATCTTTGCTCTGCTAGGGGGTACAGGTGCACGGGACCACATCCCTGTCCTTAGGAGAGGTGCACCCCCAGCGAGGAGGAGATGAGTCTTCAGGCTGCACAGCTCCTGGCCAGGCAGGGCAGCACATTCCTGCCACCTGCATTTGTTACGGGCCCTCTGTGTGCCCGGCTCTGCTCTGAGCCCTGCGGATCCAGCAGCAAGCATGAAGAGCTCCTGACCTTGCTGTGGTGGGGAACAGAAAAGTTAAGATCATGTCAGGTGGCAAAAATGTTAGAGAGGAAACGGGAGGTGGAGTTAGGCTGGTGACTGTAAATAGGAGCGCCAGGGGCCAGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGTGGGTAGATCACAAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCACACCTGTAATCCCAGCTACTTAGGAAGCTGAGGCAGGAGAATCACTTGAACCCAGGAAGTGGTGATTGTAGCGAACTGAGATTGGGCCACTACACTCTCAGCCTGGGCAACAGAGGAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGAAGCACAAGGGATGCCTGCTCTGAGAAGGGGACATTTAAGCTGGGAGCTGATAGAAGTGTGGGGGGCAAGCCAGGCGGGGATCTGCGGTGAGGGGACAGCCAGGGCAAAGGCGTGGGGCATCCACACAGCAGTGTGACCTGTCCTGTCATGTTCCAGGCACAGAGTGAGCCACTCAGGAAGCGCTCAGAAGACTTGGGCATAAAAACAAAAAAAGAAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTCAGGAGACTGAGGCGGGCGGATCATGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGTTACTCAGGAGGCTGAGGCAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAACTGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAGATGAATCCTACATCAGTGAACTGGGCATGGGCTCAGCAATGCCCAATTGACCGTGTGTGTTCTTGTATGGAGATGGCTGGCCCCGAAGCTCCCCAGAGGGATTTGTGCTAGAACATGGATGGGGACTTTGAAAGAGGGGGCGGGTGACGGAGGAAACGTGTAGGGCCATTCTGCCTTCCGGGTGCATTCCTCATGGCCAGTCGCAGACATGTCTCTAACCTTACTCCAGGCTCCTGCTTCTCAGGCGTGGTGTCCATCACATGCCGCCCTGCGAATGTTGAGGGTGTGGGCTCTCGTGTGGGAGTTAGAAGACCTGGGTTTTTGTCCAGCTCTGCCATTCATCACCTCCATGACTCTGGGCACATCAGGGGTCCTTCGTGGTCTCAGTTTCCTCTTTTGTAAAATGGGAATTATGGCTGTTTTACCTTCTCAGCAGGTATGCTTACAATGAAAGAACCCCTGCCCATGTCGAATGTGGCTATGGATAGAAAAGCTCTTTGGAAAAGAGAGTGCTTTATGGGATGGGAGGGGGGCTGGGGACCCTGAGTTTTGTCCTTGTCCCACAGGCCCATTCTCTTTCTTCTGCTTCTCTTTCTGACAG
Seq C2 exon
ATGGCAGGAAAGGGACACAGCCGGCGCTGATGCTGGGAGGCCTCCAGGGATGGAGAGTGGCCTGGCTGGCAACGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196456-ZNF775:NM_173680:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)