RnoINT0168642 @ rn6
Intron Retention
Gene
ENSRNOG00000008362 | Zfp775
Description
zinc finger protein 775 [Source:RGD Symbol;Acc:1304910]
Coordinates
chr4:78240385-78248472:+
Coord C1 exon
chr4:78240385-78240442
Coord A exon
chr4:78240443-78248390
Coord C2 exon
chr4:78248391-78248472
Length
7948 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCTTCCCTCTGAGCCCCCAGGTG
3' ss Score
5.29
Exon sequences
Seq C1 exon
GGTACCCAAGTCGCCCCTTGGGTAGCAGTTCCCGTTAACCTTAGCCACAAAGTCAAAG
Seq A exon
GTATTTATTTCTCAGGCCCCCTCCCACCGAGTCCCTGTGCAATTCTGGCGGGGAGGGGCGGTTCAGGGACGGACCAGCGCCCGACTGCTGTTCCCGTGCTGCTCTGCTGTCCCGGACTGTAGAGGAAAGATGGGTACCGGGCCTTGAGGTGCCCGGGATCCCGCGTGCGCCTCAGCTCTGGGCCCCAATTTTCTGCACCACCAGCACCCTGCCCAGCTCAGTGGGAGGGACCTGAGGTTGGCTGGGAGGGCAACAGGCCAGGGCGGTAAGGTCTGGAGGGTAGGACCGTTGGAGAACCTAGAGGCGGCCCCTCCTGACCATCTGGTTGTTCTGAGTTCCCTGTCTGTGTCTGCACCCGGTGTAGAAGAGCTTGGGGCAGCAATCCCAGTGTCGGCTACAGAAAGACTCGTAGTAAGGGGATCCCTAAGTGAGCGATTCCGTGAGCCGGGATGAAGATGGAGGAAGAGGAAAACACTTAGAACTTACAAATGTGTGCGCGTCTTGAGGGGTGGTTACTGAGGCTTCTTTCAAGTAAAATGACCACAGCAGCCTCAGTGGGTGTGGTGTCTGGCGACACGGAGTCCGAATGGTCTCTAGCAGCAGTGGGAAGTTGGGTGTGGTCACCTGAGGCTGGAGGAAGTGACAGTCCAGACTCTGCATTTTTATTTGTTTGCTTTTGGTTTTTTAGTTGTGTTAAGCAATAACATTCGAACATTTCATAGCATTTGTGTCCTGCCAGTTCCAAGGTTCCATGATTCTGTGCTTCTTCCAATCAGTTGTGGTTGACGTTTATGTAAATGAGCCCTCATAACCGAATTTTGTAATGGTTTACAAGGCTGGGGCCTGGACTGTGTGTTAGGAATAGAAGCATCCTGTATTCGGGTGCGTTTGGTGTTCTGGTGGAAAAGCATGGATGACAGTTACCCCCACAGGTACTTGTTTGGGTGACACATAAGTTAAACAGTAGCTTCGAGTCTCCAAAAGGTGTCTGTCTCTGGCAAAGTGACCCCTGATTTGGGCCAGGGAGGGGAGTAAGGGCAAGGTTCACTGAAAGATAAACAAGTAAGTTATAGGTAGGCAGGCATGTGAGATATTAGGTGATATACTGGGGACAATGGGGGAAAACTAACCAAAGACTTTATTTTGAATGCCTTGCCAAGACATTTTTGTCTAAATTTCCAAGTATCAGGGAGCTCTTAAAGTATGTTAAGAGAGTAAAATGTCAAAATCACACTTTTAGAAAAATCAGTTTGGAACTTGGTGATGGTGGCCCACACCTCCCAGGACTTAGGAGGCAGAGGTAGGCAGATGTCTGAATTGGAGGCCAGCTTGGCCTACAGAGTGAGTTTCAGTACAACCAGGGCTACAAAGAAACCCTGTCTTGTGAAGGGTGAGGGGAAGAAAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTTTGGGTTCTGGTGGCAAATGGATTTGGATGGACCAAGAAAATCAGTAAAACTTTAAAACCATTCATTCATTCATTGAATTTGTATGGGTATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACAGAGGACATAATTTTTGAAAGATGGTTCTCTCACTCTACTATGTGGATTCCATGGATTCCATGGTATCAAGCTTAGGTCAACCAGCTAGCATGTCAAAATACTTTAACCCACTAAGCCAGTGGCTCTCTACCTTCCTAATACTGTGACCATTTAATACAGTTCCTTATGTTGTGGTGACCTCTAACCATAAAATTATTTTCATTGCTACTTTCATAACTGTAAATTTGCTACTGTTATGAATCATAATGTAAATATCTGTGTTTTCTGATATGGTCTTAGGCAACCTGTGTTGAAAGGGTCATTCGACCCCCAAAGGGGTCTGTGTCCCACGGATTGAGAACTGCTGCATTAAGCTTGTTTTGTTTTTTGAAGTTATTTAGGTGAGAAATGGTGAGATCTGGACTCAGGATTGGTGTCAGGTGGCCCAGGACACCAGGCTCCTGATTCCCATGCTAGGTGCCATGAGAAAGCCTGGAAGAACTTTGCTGACCTTGGGTGTGGGCTCAAGGGAGAAACTTGGGCTGATGATATAGACTTGGAGTAACACAACTCACCTAAGGTTGGTAGAGGGAAAGGGGCCTTTGCTCCTGTAAGGGCTAGGCCCTGGAGGAGCTCACACTGCATGGACTACTGGGCACAGTCTGTTTTTTTATGTCCCGGAAGGCTGCACAGACTCTGTTCCTGGCTCCCTTAGTTCTGGCTTTTGGAGTGAGTAGCTGTGTTAATATGGCTCTGGATATTCAAAGACTCTTTAAAAACACACACACAAAAAAACAAAAACAGGGGTTCATGTAGCCCAGACTAGTGTTGAACTTGATATGTAGCTTAGGCTGGACTTGAACTCCTGGCGCTCTTGTTACTGGAAGCTTAGGTTACATGAATGTACGACTGTTCAGCTTTGAGAAGATGTATCTCACGACTGATTGTTTCCGTTGTCACGAGTGGACAGTAGAGAGAGCTGTGTTGATATGCTTCACGTTGGCACCATTGTATACTGTTGGAAATGCACCTTAAAAAGACTTATTTTTAATACCTTATGTGTCTAAGTGCTTTGCCTATGTGTATGTCTAAGAACTACATACATGCAGTGCCTATGGATCAGAGGAGGGAGTCGGTTCCAGTTCCAGGAGTTACACATGATGATCCGTCATCATGTGGGTGCTGAGAACTGAACCCCATCCTATGCAAGAGCAGCAAGAGTTCTTAATATCCGAGTCACCTCTCTGGCCCCTGTGCCTTATGTTCTAAGATGCTTTCCTCTTTGCTTACAAGTATAGCCTTCCAGTCCTCCTGTGTCTAAGGGACAGTGTTGTCTGTCCCAGTGTTGCCTGTCTCCCAGTGGTTGTTTGAAACTGCAGCTAATATTGGACCATATTCAGTCTTTTCCAGCACACAATCTCACAGTGTAATTTATAAATCAGACATACAGAAAGGGTAAGGTCAATTAACGCTTCAATATAACAGTTAGGACATTTGTACCATAATAAATGTCATGTGGTTCTTGGTTCTCTCAAAATGTCTTATGTATTGCACCAGGTGAGGTTCTGGAAAGCACACTGTGGGCAAATGGGTGGGCCCCTTGGAGCTCCCTTCTGTGTCCTTGAACTTCTGTCTCCTGTCTCCGTAGCTGATTTGAATAGGAGGCATTTGCTTGTGTCTTCCAAGCTTCCTGCTTGCCTTTCAGCATGTTTGAATGAAGTCTTTTCCAAGGCAGAGAAAACGTGTTGTTATTGACAAAGGACTGGGGCAGAGGAGTGACAGCATTTAAGTCTTCAGTCTAATTGGCCAGCCATTTCAGTGCTAGTGGAGGCTCTTCTGTGTCAGGGCTCTGGCAGGGCAGCCTTCCTAGAGCTCCTCCTGGAAGACACAGTGGCATTGGCTGCTAGTCATGACCACACGTGGTCTCTGACTCACACATGACCAGTGTCATTGAGAGACTGAATCTAAAGTTAGCTTATTTGAATTGAGGATGTTTTTGCTGTATTTTTAAAATGATTTTGCTTATTTTTATTTCATTTGTAGTAATGTTTTGCTTGCATGTATGTTTGTGTGAGGGCATCAGGTTCCCTGGAACTGGAATTACAGGTAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCTCTGGAGGGCTGAGTCATCTCCACTTTATTTGAATTTAAAGAACAGAGTTGGGCATAGACACCAAACTCCTGAAGATGAGGAACTGCGGGTTTGTTTTCGGTCACCTTCCAAGTCTCATGCCCTCTCTTGGAGGCCACATAGTTACAGAGTTAAGGTACCAGCATATCCAGGACTTGAGCAATGACTTAGCCTCTTGGAGGCAGGATTTCCACCCATTCTTTCTTTCCCCAGGTCATTGTCAAGGTGTTTAAAGAAGCCTTACCCCCTCCTCCGACAAGGGGGGGATGTGGGCGCTGCAGCTCCTCTGCCTCAAGGGGAGATCTGAGAACCCCCACCGCACAGAGACACAGAGGTTGTTCTCATCTATCCCAATGCAGATGTTGTCTCAGCTCTCCAGCAATTTCCTGGTGAGGCAGGCAGGCAGGGAAAGCGAGCAGAAGGCAGTCACTGGTGGTGCTCTGGGGAGAGGTGGGGTCAGTGAGTTCTAGGAGGGAATTGGCAGGTAGGGGGGTCGGGGGGATTGGCAGGTGGGGAGGGCCCCTAGGCAGACTGTCTCCTGTCTGGGTCTCCTGGGAAGGTAAAAGGTCATTAGTCCATATGAGAGTTCAACAGGGCGAGGACTTTGTGGGACCTCTTGACTGAGGAAAGCCAGTGGCTGGGCTTTTATCATTGGAAGTCCTACTTTACTACTGAGGAAGGAGATGTGAGGTACCATCCGCTTCTCACTTCCATTCCTGGGCAGGGTCCTGCACTGTGGGAGGGGTGAGGAAACCTGACAGGTCCCTGAGGTGCTGGTCCCTGGCATTTGGCCTCATCTCATTCCTACTTCTGCACTTCATGCTTTTCAGTCTATGCTGACACCAAAGTCCCTGGTTATCTTCCCAGTCCCAGGCCCCACCACCTGCTGCAGGCCACACTCCCCTCTTTGTGTTTCTGCAGTTGGCAGTGCAGCTGGTGGCTTGGGGACTTCCCATCAGGGGAGTCCATTTCCAAACTGCAACCTGACCCAGTGTGGGGATCTAGGCTTGAGCAGGCATGGGAAGATGGAGGTGACCAGGGCTCTATCTTGTATGTGTTCTGTCCTTATGGTATCTGTGGGTGGGGTGGAAGGAAGAGAGCGTCAGGACTAGAGGTCAGGCTCCCTGTGATAGACCAACATGTGTTCCTGTCTGGTGAGGCTGTATAGGAAGGTGCGTGTGTGTACACCTGTCCCTGTCCCTTAGCTTCTGTGTCCTGCTGGGTGGACAGTCAGCTCACTCTTGTCAGCTGACTGGTGCATCAGGTGGGCTCTGAGAAGGCTAAGTGGTGTAGTAGAATGATGGATGGAATGAGAGACAGACACCCTTGGTAAGAGTCTGTGGTGACACAGAGGACCCAACAGGGTCCACATGCAGGGCCTGCCTTGGGCTTGGGCTTGGTTTTCCTAGGATGTTGTTCTGCAGACATGGAACATCTGAGCTTACAGGAAGTAGGTCTCAAAAGCCATGGCCTCCCTCCCCCATCTCTGTCTCTTTCTGTATCCTCCCTTGTTTGACTCTTTTGAGCATGTGTGGGTCTCCTTCCTTCTGTCCCCACATTTGTCCCTGCTGAGATCCCAGAAGAGTTGCTTGGCCTGCTGTGGTCTGCTGTGGCCTGCTGTGGCCTGCTGTGGCCTGGACAGACATATTAAGGTGGTGCTCAGGTTGGGTCACCAGGAACCGAAGCCTTTCTGGTTCCGTTTTTAAATCAGTTCTTAGAAGCCAGAGTAGGTAAGGTGGGCTCTGACTGGGTGGTTTAGGGCCTGCCCTGTGTGGTGTAGGTGAGACCTGGCCCTCTAACCTGGTTCTGCATTTCTGACCCACGCTCTCTGTCTGAGTCTCCCCATGGGTATGTGACCTCTCTGTTTGCAGTTCTCAAGGCCTCTTGAGGTGGTCCCCAAGGTGTGGGATGTAGAGGGACCAGGAGACAGTGGGTGCAGGCAAGAGGGAGCTGCAGTCCCAAGATGACTCTTCAGGTAGAGGTTGCTTTTAGCTTCCTGTTACTCCCTTGTGTCTGCCCACCAGTGGGTTTCAGTGTCTAGGAGAATGCACAGTGGAAGTTCTCCCCAGATCCTCATGGGGAAACCTGCTGCCTCCACAGAAGAGATCTCCACAGGGGTAAAAGGCTGAGGTTTGTTTTGTTCGTTGAATAAATACTAGTAAGAACGGTGACATTGCCAGACAGTGGAACTCAAGCCCCGGATATATGCTCTCCCAACAAATCACGTTGGTCCCCAGGCAGGAGGACGTCACATGCAGCATCACATGGCCCACCTGGTCATTGGGGTGCCATCTGTTAGATAATGGCTCTAATCCAAATTAAAAATAAACATCGTATTTTTATAAGGGAAAAGTTTCTATTTCAGCCAGCCTACCTCTCTCTGGAAGATGAGGCTCTGGGCTTCCTTTCTGTTCACATCTCCAATGATGGCTTCCAGACCCTTGAGGAAGACATTAGTGGGTCATCAAGCTTGCAAGAGGCTTATTTAGTTTTGCAAAGATCTACAGCTGTTTAGAGAGGACAGGGCCAGAGCTTAGCAACTGCAAGTTTCTAGAGAAAATGTTCTGAGAAAAAGAAAGATGTTTCTTCCCTTCCTTACAGCCGGGGTTTGTCTTTCCAGTCAGGGCACCAGTTTCTAGCCTGGGTAACTACTCCCAAAGCAGACTTAGGAAGGTGGCTTGGGGATTATCCAATCGAGAGATAGTCTCTGTTCAGGTCTCTAGAGCCCAGAGTTTGTTTTCTAGTTGACGATAACCCAATCAAAAGTACCAAAAAGGCCCTGTCCAAGGCCAGCATGAAGTCCACAGGGCAGCTAACATAGCCCCTCCTTGTGTTAAGGTGGCATTAGTGGGTAAAGCCAGACCCCAACTTTAGGAGAGAAAGTCATGTGTCTGTGGTGGGTAGAATGAGCCCACCGTGAGCCACAGCTCAAAGCCAGGCACAGTGTTTGGAAATGCACAAACCAGTAAGTGTTGGAGGTGAGCTGGGGAGATGCTGGAAGCCTTGAGTTCTAGCCCTAGCACTGCATAAAAAAGCCAGGCACAGGTCAATGATGGAAGCAGTAGGGATATAGAAACAGGGGGCCATAAACTGAAGATCTTCTTGGGGTACCTGATAAGCAAGGGTAGCCTGGGATACACAAGACCCTGCCTTATACTCCTCTAAATACTGTGGGGGGTGGGTGAAAAGAAATGTGAGGGGAGTTGACTTGTCCATGCAGGTCCCAGGATAAGCCAGCTACTGTGGTAAGGTGACACTTAAGCAGAAGAAGGTTTCAAGAGTGAGACAGGTGGGGATGAGAAGACCAGTGCAGCTCAGACTTGGGTAGCCAAGAAGCTCCACGGTCTGTCTGGGGTGTCCACACAGCTACACTGCCTCAAGCCATACCCAGGTATAAAGGGAAGCAGTTGGGAATCAGAAGATGAGTGTGAAGTAAGATAAGATCGATGAATGCTAGATCATGAATAAGGAGTGTGGGCTAGCATGTTCTTGGTGGCAGTGATGGCATCAGCGGCAGCGGCAGTGAGATGTCCTGGAGGGGTTTACTCTGGGGCATTGGAAGAGTGTTCCGCTGACTTAGGACACGTGGGAGAAGGTCTGCCTTCCATGTGTTGTTTTGGTTTTGTGATGATGCTGGGGGTTGAATTCCAGGCCTTGCACACAGCTAGGCAAGCGCTCTGCTCTTGGGAGTTACATCCCCAGTCCCTCCAGGTATCTTCTCTAGCAGAATCCCCACATCTATCCTTACCTGATAGACCTGGTCCTCAGGTGGCATGCTGCTCACACACCCTCTACCCATGCTGAGGCCGTGGGCCTTAAGTCTCTAGTGGGGGGTTTGTCCAGTTCAGCTGTTCAGTCATCTTTATGTCTCTGGGCACACCAAGGCCTCTCTTGGGCCCAGTTCCTCTTTGTACATGAGAATTGTGCCAACCCAACCTTCCCATCTGCACAATTTTACCTGAGGGAATGGATAGAACTGAAAAACAAACAAACAAACAAACAGAAACCCAAACCTCCTCCTCCCCCCCCAAAAAAACTCCAAAACCAAAAAAGCCTGGGCTATGAGAAGGGAGGGGGGCTGGGCAAATGGTCTGGACCATGTGCCATCAGCCATTCTTTCTCTTTTCTTCCCTCTGAGCCCCCAG
Seq C2 exon
GTGGCAGGGCTGGGACCTCACCAGCACCGATGCAGAAGGAGACCTGCAGGGATGGAGAGGGGCCCTGCTGGCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008362:ENSRNOT00000011041:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]