RnoEX0101691 @ rn6
Exon Skipping
Gene
ENSRNOG00000008362 | Zfp775
Description
zinc finger protein 775 [Source:RGD Symbol;Acc:1304910]
Coordinates
chr4:78240385-78248472:+
Coord C1 exon
chr4:78240385-78240442
Coord A exon
chr4:78244459-78244579
Coord C2 exon
chr4:78248384-78248472
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTTTCTTTCCCCAGGTC
3' ss Score
12.55
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
GGTACCCAAGTCGCCCCTTGGGTAGCAGTTCCCGTTAACCTTAGCCACAAAGTCAAAG
Seq A exon
GTCATTGTCAAGGTGTTTAAAGAAGCCTTACCCCCTCCTCCGACAAGGGGGGGATGTGGGCGCTGCAGCTCCTCTGCCTCAAGGGGAGATCTGAGAACCCCCACCGCACAGAGACACAGAG
Seq C2 exon
CCCCCAGGTGGCAGGGCTGGGACCTCACCAGCACCGATGCAGAAGGAGACCTGCAGGGATGGAGAGGGGCCCTGCTGGCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008362_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCCAAGTCGCCCCTT
R:
CAGGGCCCCTCTCCATCC
Band lengths:
132-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]