HsaINT0188373 @ hg19
Intron Retention
Gene
ENSG00000197782 | ZNF780A
Description
zinc finger protein 780A [Source:HGNC Symbol;Acc:27603]
Coordinates
chr19:40590652-40595321:-
Coord C1 exon
chr19:40595167-40595321
Coord A exon
chr19:40590706-40595166
Coord C2 exon
chr19:40590652-40590705
Length
4461 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTGTTGTTGTTGTTTTCCAGGGG
3' ss Score
10.52
Exon sequences
Seq C1 exon
AACAGGAGCATTGGGAATATGTGATTCATTGCGACTGCTGGTTGTATATTAAGAAAATGAGTGAGGGGCTCAAATGATCTAGGACAGAAATTCTTTCTTTTTAAATCGACAGATATAATTGTATGTATTTATCATGTGCAACATGAAGTTTTATG
Seq A exon
GTATGTATACATTGTGGAATGACTAAATCTAGCTAATTAACAATGCATTACCTCACATAGTTATCATTTTTGTGGTGAGAACACTTAATATCCACCCTCCTAGCATTTTTCAAGACTACAGAATATTGTTATTAATTGGAGATACCCTGTTGTGTAATAGATCTCCTGAACTTATTTCTCTTATCTTCCTGAAATTTTGTATCCTTTGACCAACATTTCCCCAGTCAACACTGCCCTCCTTCCTCCCTCACCCACATTACCCCAGATCTGTAAATACGATTCTACTCTCCACTTCTATGATATCAACTTTTTTAGATTTGGCTGAAGAGTGAGATCATATGTCTTTCTGTGCTTGGCTTACTTCACTTAATATGATGTTCTCCAGGTTCATCCATGTTTTTGCAAATGACAGAATTTCCTGCTTTTTATGGCTAAATAGTATTCCCTTGTGTAAATATACCTGCATATATACCACATTTTCTTTATCCATTTATTCATTGTTAGACGCGTAGGTTGATGCCATATCTTGGCTATTGTGAATAATGCTGCAATAAACATGGGTATGCTGATATCTCTTTGACATACAGATTTCATTTCCTTTGGAGATATATTCCCAGTAGTGGGATGGCTGGATCATATGGTAGTTCTATTTCTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAATGGCTGTGCCCATTTACATTCTCACCCACAGTGTGTAAGCGTTCCCCTTTTCTTGCCAATACTTGTTAACATTTGTCTTTCCAGTAGCCACCCTAACAGGTATGAGCTAATATCTTATTGCGGGTTTAATTTTCATTTCCCTGATGATTAGTGATGTTGAGTATTTTTTCATAAACTGTTGGCCATTTATATGTCTTCTTTTGGGATGTGCCTGTTCAGGTCCTTTGCCCATCTTTTAATCAGGTTTTTTTTTGCTGTTGAGTTGTTTGACTTCTGCATACATTTTGGATCTTAATCTCTTATCATATATATGGTTGCAAATATTTTCTCTCATTCTACAAGATGTCTCTTCACTTTGTTGATTGTTTCCTTTTCTGTGCAGAAGCTTTTTAGCTTGACATAATTTCATTCGTTCATTTTTGCTTTTGTTACCTGTGCTTTTGAGGTCATATCCCAAAAAAAATCATTGCTCAGATCAGTTTCACAGAGCTTTCCCCCTATGTTTTCTTCTATTTGTTTCATAGTTTAGGATCTTACATTTAAGTCTTTAATCTGTTTAGAGTTGATGTTTGTATAATGGTTTGAGATAAGGGTCTAATTTCATTTTTCTGCATATGGATACCTACTTTTCACAACAGTATTTTTTGAAGAGTCTCTCTTTTCCCCATTGTATGTTCTTGGTACCCTCCTCAAAACTCGGTTGGTTATAAATATATGGATTTATTCTGGGCCTCTCTATTCTGTTTCTTTGGTCTATGTGTCTGTTTTTATGTCAGTACCTTGTTGTTTTGGTTACTATAGCTTTGTAGTATATCTTGAAGTCAGATAGTTTTGATGAGTCCAACTTTGTTCCTTTTGCTCAAGATTGCTTTGGCTATTTGGGTCTTTTGTGGTTCTATACAAATTTTAGCATTTTTGTTTTTTTCCTGTTTCTGTAAGGAATGTAGGACAGAAATTCTTAACCTGAGTTCCTGTGACTCCATTTATGGTCTCAGGGACCAAAAGCTCTTGAAATAAAATATTGAAGTATTATAGAAATTTATAAATGTGGGTTTTAGGGGGAGAAATAGTGTATCATTTCATAAGATTATCAAAAAAATTTATGTGACCCATGAGGTTTGGATCCATTGATCTAGATAGAACATTGGTTCTCAGCTGGGGTGATGTTTAGAAACTTTCGGTTGTCATGCTGTCGGGGAGGGTGCTACTTAGATCTAATGGATAGAGGTCAGGAATGCTGCTAAACATTGTGTTATGCACAGGATAGCTCTCCCCACTCTCCCATCTAAGAATTATCCAGCACAATATGTCAGTAGTGCCTAGGGTGAAAAACTGTAGTCCAGAATCAAAAGATTGTGATATCTGGAATGACATTGTAAATGATCTTGTATAAAATAAGTGTCCTATAATACAGAAATCATTAAGCTAATCATACTAGACTCAAGTGATAGAGTATTACACAGGTAATAAAATGATGTCTATAAGGAATTATGAAAAGAAAAATATTTGATATATCATTAAGCAATATTCATGCTATGAACAATAATACTCAAGAAAATGTTACATGGGGCGGGGCGCGGTGGCTCACACCTGAAATCCCAGCACTTTAGGAGGCTGAGGCAGGCAGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTTGCCAACGTGGTGAAACCTTGTCTCTACTAAAAATATAAAAACTAGCCGGGAGTGGTGGCAGGCGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGTTTGAACCTGGGAGGCTGAGGTTGCAGTGAGCCGAGATCAGGCCACAGCACTCCAGCCTGGGTGACAGAGTGAGACTCCACCCCTGCCCCCCAAAAAGAAATTGTTATGTTTTATATGAATCCCATATACTAAGATAGGGTTTTTGTATAAGAATTCTATAAGAATTCTATCTGAAGGCATTCTATAAGAATTATATCTAAAATAATATTTTAATTGGTTATTTGGTGAAGAAGGGAACCAAGCATGGTGGTGTATATTTCACAAATTTTCTCACATAGTTTGCAAATGCCACTTATCTGCATTGTGTTCATTCAAAGAAGAATCTTGATAATGAGAATATCTAATTATATTGGTGAGATACAGCTAAAGGATATTAGAACTAGCTGATGTTATTTGTTGTAGTCACTTTAACCTCTTTTGTTGAATCTCGTGACAGGCTCAGGTTTTTTTCCTGATAACTCTGTTTTTATTTTTTACTTCAAAAGTAGAAATAGACTATCATTAATGCATACAAGACATTGGTTGGGGACTTGTAGACAATTTTTTCTAGAGATTGCTCCAACATACATAGAAAAACATAGACATCTTAGTGTTGGTCAAGAATTGGAAAATAAAGGAAACAAACTTGTTAAGTAAAAACAACAGTTCATTAGAGTATGCTGATTTCCCACCCCAAGTTCAAAGGGAGATATCTAAATAAAAAGTGTCTTTCATCTAATTTGGAGAAGTTTCCTCATAGGAAAGAAATGTGTATGTACATTTATATATGTCCATATATAGAGATGCATACACACACACACACACATATATATATATAAATATATATATACACACACACATATATATATACACACACGTGTGTGTGTGTGTGAATATAACTATATATATTCCAAGTTAATGCTTGGATGTAGTTACAATTTTTTTTTATATGAAGGCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTTACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCATGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGTATCACCATGTTGGCCAGGTTGGTCTCGATCTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACCGTGCCCGGCCATGAAATGCTCTTAAGCAAAAAGAAGAAAATTGGAGCTACAATACACAGAGGAGAACTCTTAACATGTATATAATTTTCTAAATTTTTTTCTATTAATGTCTGTTAGTCTTTTTATTAGTATTTCTATATACATATATTTTACAAATGTAATCATATTATCTATCCTGTTTTGTAACCTGATTTTTCTGTTAATCATATATCTTGAACGTTTAATATTTACTTTGTATTCTATTAAGTGGATGTTCTGAACTGTATTAACCAACTGGCTTTTGCTGAATTTAGAATGCTGAACACTGTCAGTGCAATTTGGTGCAAACACTGCCAGTGCAAATATGCTTTCCAGTTCTCATGCCTTCCCCCACTGCACCCAATCCTGATTTCACAAAGAGGTTCTGGTTTGGATGATGCAATCCCTTCTCAGCTCTGAAAGGTGGGACTGGGGGAGGAGGATCTGCTAAGGGCAGGATCAGAGGTCCAGACCTAGGCCAAGATAGGTATCCCAAGAATGGAGGACTGGCTGGAAGCCACAACTTCAAGGCAGAAATGCCTGTGCTCGGCATTCATGCTTCTGCCGCAGGTTCCCTGGGATGCAGGCGAGAGCTTGGTTTCATCCCTACTCCACCCGTTCACTGCCAGCTATTTGTGAGAGAGTGTGTGTGGGGGCAAGGGGAGTGATGGGAGAAGGGTGGAAGTGTGCGTGTTAGCAGGAGTAGTTGAGAAATAGGAACGGAGGATAAAATAGTTATTTGCTTTTGAGACACAGCTTTAATTGTGGCCTTTTTGTTGTTGTTGTTTTCCAG
Seq C2 exon
GGGAGAAGCCCGAGGAAGATTGACCAGTTTTGTAATTCTAGCAACATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197782-ZNF780A:NM_001142579:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)