HsaINT0188377 @ hg19
Intron Retention
Gene
ENSG00000128000 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:33109]
Coordinates
chr19:40556231-40562115:-
Coord C1 exon
chr19:40562096-40562115
Coord A exon
chr19:40556285-40562095
Coord C2 exon
chr19:40556231-40556284
Length
5811 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTGTTGTTGTTGTTTTCCAGGGG
3' ss Score
10.52
Exon sequences
Seq C1 exon
GGGGTTGACGACCTAGCTGG
Seq A exon
GTAAGGTCTTCACGTCCTAGGAAGAAATCGGTGGCTGCGGGAGGTCTTCGTGGACTGGGACTCGAACCTGACCGACCCGGCAGTGCGGGTGGGCGAGAGCGAGGCGCTCAGAGGAGGAACCCGGGGCGCAGACGGAATCTGCCAGATCCTTAGGCGTGCGTGTGCGCGGGCATCAAAGGATGGGGATTGCGCGATCTTGAGTGACGGAGGGGACTGTGTGAGTGTGTGCGTGAGGCCCTGTGCACAGGACCGGGACGGCGTGTGGACGCAGTGCGTTTTGCTGGGGCTGTGTGAGTGTCACTGTGCCGGTGGTACTAGGCTCCTGCTGCTTCCTCCGTCTTTCCCCTTCAAAGCTGCAGAGGCTGCAGCAGAGGAATGAAAATGTCCCCAGTAGGGAGGTTAGATATTGAACCGAGAATGAAGCTTTGCACAAGAAGGCGCAGATCTGGACTCGGGGTGGGAATATGAGAGCTGGAAGTGCCTCTTGAGGGTCCCCCAGGAGGGCAGCTACATGTTGAGAACCCAGCGTCCCTCAGAGATCTGTCCCCAGGAACCAGCTTCGAACTCAGACCGATTCCTCCTCCTTTTATTTCCTTCTCATTTCGTACGAAGTGAGGGAAGTTGTGGCCATGGAGGGTGCTTTCAAACTTAGTCTGCGCTCCAAGAAAAGCCTGGAGTCTCACGCTTGCCGTATCCTTCTCCAGTCGTATTATTATCCAAAAGAAGGACCGAGAGGAGGATGAGAGCGTTATTGTTGCACACTTAAGTCAAGGGTGAGTTTGTGCTTTGTATTTGTTCAAGAAATGCGTTTTTGATTTTAGAATATAGAGGTTCCTGTAAATTTTTAGTGAATTTCAGGAGAATATGCAAATTGATTCTTGCCCCCTCCCATTGTGCCGCCTCCCAGCGAGCCGTTCCCCACCCCGCCCGCTCCCCACCTTGCCATTTAATATTCACAGAGCCATTTGGCAAATCGTTCACACCTTCCTGTACGCTCTCTTCTTCTAAGCTGGTATAAAAATAGTCCTCCAGAGGTTTATATTAAAGCTTTATTTTAGACTCTGCTTTGAAAAGAAGATTAGTTTGTGGAATCACACGCCAGGTTTCTGACTCTTTACAGGCCTCCTTTTCCAAGTAGGGAAGAATGGAGATGGTTGGGTGATTTCCATTCGTCTGTGAGGCTTTCAGGAATCGGAAAGTGATTGCACAGAAATTGGTATCAACCAGAGTCAGGATTTTTCGGGAGAGTCCATGAGATGATAATTGTAATACTTGCCAGATCTCTGTGAGATTCGGCAGTTCCGGTTGCATTTTGGGCTATTTGTGTGAACTGTGAGAGGCAGTACGCTGTTGCGGTTAAGAATAGGGGAGTGGATCCAGAGTATCTGGGTTGGAATGTTTGTTCTGTCCGTTTCTGGTCTTCTCAGGCTTGTAATGAACATTAGAATGAATTAATACTCTAAAACCTCTTAGAGCAGTGCTAGGCATATAATAATAAATGTTTAATGTTTTAGCTTTTGTTTTCGTGTGGTCATTTTAGGTCATTTCCCTTGACTTTCTATAGGACAGGAGCATTGGGAATATGTGATTCATTGTGATTGCTGCTTGCATAGTAAGAAAATGAGTGAGTTGCTCAAATGATCTAGGACAGAAGTTCTTTTTAAATTGACAGATAAAATTGTATGTATTTATCGTGTGCAACATGATGTTTTATAGTATATGTACATTGTGGAATGACTAAATCTAGCTAATTAGCAATGCATTACCTCACATAGTTATCATTTTTGTGGTGAGAACACTTAATATCCACTCTCTTAGCACTACAGAATAGTTATTAATAGTAGTTATTAATAGTAGATACGTTGTTGTGTAATAGATTTCTTGAGCTTATTTCTCTTATCTTCCTGAAATTTTATATCCTTTGACCAACATTTCCCCAGCCAACACCATCTTCCCTCCCTCACCCACATTACCCCCGACCTGTAAACACCATTCTCTTCTCTAATTCTATGATATCAAGTGTTTTCTTTTTTTGAGAGAGAGTGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGTTCACTGCAACCTCTGCCTCCCGGGTTCAAGTAATTCTCCTGCCCCAGCCTTCCGAGTAGCTGGGACTACAGGTGCATGCCACCACACCCAGCTTATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGGTGGTCTCGAACTCTGGACCTTAGGTGATCCGCCTGCCTCGGCCTTCGCCTCCGCTTTCGAAAGTGCTGGGATTACAAGTGTGAGCCACCGCACCTGGCCTATATGAACATTTTTCAGATTCCACTGATGAGTGAGATCATCTGCCTTTCTGTGCTTGGCTTACTTAATATGAATTTCTCCAGGTTCATCCATGTTGTTGCGAATGACAGCATTTCCCTTTTTTTATGGCTAGTTTTCCATTGTGTATATATACCTGCATATATACCACATTTTCTTTATCCATTCATTGATAGACAGTTAGATTGATTCCATATCTTGGCTATTGTGAATAGTGCTGCAATAAACATGGGTGTGCAGGTGTCTCTTTGGTATACAGATTTCATTTCCTTTGGATAAATATCCAGTAGTAGATTGCTGGATCATATGGTGGTTCTATTTCTAATTTTTTGAGGAACCTCCATGCTGTTTTCCATAATGTCTGTGTCACTTTACATTCTCACCAACAGTGTGCAATGGTTCACATTTCTCTACATTCTCACCAACATTTGTTAACTTATGTCTTTTCAATAGCCACCCCAACACATATGAGGTGATATCTTATTGTAGGTTTAATTTTCATTTCCCTGATGATTAGTAATGTTGAGTATTTTTTCATATACTGTAGCCATTTATATGTCGTCTTTTGAGATGTGTTTATCAGGTCCTTTGCCCATTTTTTAATTGGGTTGTTTTCTTGCTGTTGAGTTCCTCACACGTTTTGGATATTAACCCCTTATTAGATACATGACTGCAAATATTTTCTCTCATTCTGTAGGTAGTCTCTTCACTTTGCTGTGCAGAAGCTTTTTTAGCTTGATGTAATTTCATTTGTCTATGTTTGCTTTTATTGCCTGTGCTTTTGAAGTCATTTCTAGAAAAAAAAATTATTGCCCAGATCAATGTCATGAAGCTTTCCCCGTACGTTTTTTTCTATTTGTTTCATAGTTTGGGATCTTACATTTAAATCTTTAATCCATTTAGAGTTGATTTTTGTATAATGGTTTGAGAAAAGGGTCTAATTTCATTCTTCTGTGTATGACTCCCCAGTTTTCACAACAGTATGTATTGAAGAGACTGTCTTTTCCTTATTGTATGTTCTTGGCACCTGTCTCAAAAATCAGTTGGTTGTAAACATATGGATTTATTCTGGGGCTCTCTATTCTGTTCCGTTTGTCTAGGTGTCTGTTTTTATGTCAGTATCATGCTGTTTTGGTTACTATAGCTTTGTAGTATATATTGAAGTCAGGTAGTTTGATGCCTCCAACTTTGTTCTTTTTGCTCCAGACTGCTTTGGCTATTTGGGTCTTTTGTGGTTCTATGCACATTTTAGGATTTTTTTTTTTCTATTTTTGTCAAGAATGTAGGACTGAAATTCTTAATCTGAGTTCTTGTAACTCCACGTATGGTCTTGGGGACCACAAAGCTCTTGAAATAATGTATTGAAGTACTATGGAAATTTATCAATGTGGGTTTTAGAGGGAGAAATAGTATATCATTTCATAAGACTATCAAAACTGTATGTGACCCATGAGGTTTGGATCCATTGATCTAGATAGAACATTGATTCTCAGCGGGGGTGATGTTTAAAAACTTTTGGTTGTCACACCATGGGGGAGGTGCTACTTAGATCTAGTGGATAGAGGTCAGGGATACTGCTGAACATTGTACCGTGCACAGGATAACCCTCCCTATAGCCCCAACAAAGGATTATACAGCACAATATGTCATTAGTGCCTAGGGTGAAAAACCTTAGTCTAGAATCAAAAGATTGTGATACCTGGAATGACACTGTAAATGATCTTATATAAATCAAGTGTCCTGTAATATGGAAATCACTAAGCAAATTATACTAGACTCAAGTGATAAAGTATTATGCAGCTAATAAAATGATGTCTATAAAGAATTATGAAAAGAAAAATATTTGATATACCATTAAGCAGTATTCATGCTATGAACAATGATACTCAAGAAAATGTTACATGTATATGAATCCCATATACTAAGATAGGGTTTTTGTAAGGCATTCTGTAGGAATTGTATCCAAAATGATATTTTAATGAGTTATTTGGTGAAGAAGGGAACCAAGCATGGTGATGTACATTCCACAGATTTTCTCATGTAGTTTCCAGATGCCACTTATCTGCATTGTGTTCATTCAGAGAAGAGTCTTGATAATGAAAATGTCTAATTATATTGGTGAGATACAGCTAAAGGATGTCAGAACTAGCTGATGTTATTTGTTATAGTCACATTAATCTTTTTGATCCTCATGACAGGCACAGTTTTTTGTTTTTTATGATTAAAAGTACTCACTCTCTGTTAACTCTGTTTTATTTTTATTTTTGAATTCGGATGTAGAAATATGACCATCATTAATGCATACAAGAAATTAGTTGAAGACTTGTAGACAATTTTTTTTAGAAATTGTACTAACATACATAGAAAAACATAGACATCTTAGTGTTGGTCAAGAATTGGGAAATAATGGAAACAAATTTATTACATAAAAACAAGAGCTCAGTAGAGTTTCCTTTTTTTGTCCCCACGTTGAAAGGAAAATGTCTAAATAAAAGATGTCTTTCATCTAATTTGGAGAACAATTTCCTCGCAAGAAAAAAAATGTGTATGTACATTTAAATATGTACATATATAGATACATACACATGTGTATATGTGTGTATATATGTGTGTGTGTGTGTGTGTGTGAATATAATTATATATTCTAAGTTAAATGCCTGGGCATAGTCACAATTATGACATACTCTTTAGCAAAAAGAAGAAAATTGGGGCTACAATACAGAGATAAGCACTGTTAGCATGCATATACCTGTCTAAATTTTTGTATTGATGTCTATTAGTCTTTTGCTTAATATTTCTATATACATATATTTTACAAATGTAATCGTATTGTTTATCCTGCTTTGTAACCTGATTTTTCTGTTAATCATATGTCTGGAACAATTAATGATTACTTTGTATTCTATTACATGGCTATTCTGAACTGTACTTACCCCAGCTGGCTTTTGGTGAACTCAGAATGCTGAACACTGCCCATGCAATTCTGTCTATATCCTTTCCAGTTCTCATGCCTTGCCCCACTGCACCCAATCCTGAGTTCACAAAGAGGTTCTGGATTGGATGATGCAAGCCCTTCTCAGCTCTGAAAGGTGGACTAGGGGAGGAGGATTGCTTACAGCAGGATCAGAGGCCCAGTCCTAGGCCAAGATTGGTATCCCAAGAGTGGAGGACTGGCTGGAAGCCACAACTTCAAGGCAGAAATGCCTGTGCTCGGCATTCATGCTTCCGCCGCAGGTTCCCTGGGATGTAGGCGAGAGCTTGGTTTCATCCACACTCCACCTGTTCACTGCCAGTTTATTTGTGAGAGTGTGTGTAGGGAAAAAGGGAGTGACGGGAGAAGGGTGGAAGTGTGCGTGTGAGCAGGAGTAGTTGAGAAATAGGAATGGAGGATAAAATATTTATTCGTTCTAGTGCTTTCGGACACAGCTTGACTTAGGGCCTTTTTGTTGTTGTTGTTTTCCAG
Seq C2 exon
GGGAGAAGCCCGAGGAAGATTGACCAATTTTGTAATTCTAGAAACATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128000-ZNF780B:NM_001005851:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)