MmuINT0179526 @ mm9
Intron Retention
Gene
ENSMUSG00000037640 | Zfp60
Description
zinc finger protein 60 [Source:MGI Symbol;Acc:MGI:99207]
Coordinates
chr7:28516428-28522007:+
Coord C1 exon
chr7:28516428-28516683
Coord A exon
chr7:28516684-28521954
Coord C2 exon
chr7:28521955-28522007
Length
5271 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCTTTCTTTTTGTCCCCCAGGGG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GCGGACGGTCGGGTCTTTCTGGTCTGAGTAGGGAATTGCTTTGTGTCTTCGGTCTCTGCAGAGTAAGGCCGGGAGTCCGGGTGTGGGTGTGGACGGTGGGGTGGATGGATGTTGATGCGTGTGTGAGTGTTTAGGGACGGTGCTGTGTGTGCGCGCGCGCGTCTCTGCGTACGCACCTTGAGCTATTTGCATTATCACCGTGCTTGTCGCTTTCTCTCGCGGCCACCAGCAGAGGACCAAGCTTCACTGAGGAGAG
Seq A exon
GTGAGGGGCGGAGTCTGAAGGGAAGCTTTCCCTGTGGTTCAGATTGAGCTTTGTGACGAGCATTTGAGGCCGAAAGTGCCTCCGAGGGTGGCCTACTGGCCTTTTCTCAGAGCTCTAGCCGTGTGAGTGTCGAGGGAAGAGAGGGGAAATGCTCACTGGGGATGCTCTCAAATGTAATCTAGGCTTACTCAGATGTAATCTAGGCTTACTCAGGCTCCCTGCGCAGGCCATTATTCAAAAGGAGGGCTGGAGGAGCGTGAGATCGTTGTTGCTACCCACCGAAGGCTCAAGGGCGAGTTTGCGCTTTCTCTCTGTGCGAGAAATGAGGGTTTTATGTTTAGAATATGGAATTGTCAGTAAATGAAGAAGGAACGTGTAAATTGATACCGCCATCATTGTGTCCCTTACATTGTCCCTCCCCTTTCCAGTTAGTATTCACATTATCGTTTCAATGACCCTTGACATCTTCTGTCTACAATCACTCCCCCCACCTCACCGACCATGTTATAGATAGGAACCGACAGAGGTTAACAAAAGGGCTTTCAAACTCCGATGTGCTAAATCGATTTCTATTTGGATGGTGTCACACGTCAGATGGCCTTAGATCTTCTTACAGGTCTTCATTTCAAAGCAGCGGAAGAGTGGAGGTTTTTGTTTTCTAGTAGATTTTGAGATTGGGAAAGTGGTAGGCTCTCTCCCCCTCCCCTCCCCTCCCCTCCATCTGGGTTGGAGTCTTGGTTCTGTCCCCTCAGGCTCTCCAGGCCTGTCAGGAACCTTAGGATGCCTGTGGTGAAGCCTGTTAGTGCAGTGCCGCCATATCCTAAGGGCCTGGTGTGCTTTAGTTGTTGCTCTGTGAGGCCATCTTGGGTTCATTCCACTCAGTGTTCTGCAGGACAAGGGAGTGTGAGAAACAATGCGATTGCTGGTGGATGTTTAAGAAAGCCACTCAAACAGAAAAGCTAGGCTTTGTGGGGTACAACGAGGCAGAAAGAAGCAGGAAGGGCAATGTGAATTCTGTAGCAGCTTGATCCCCATAACACGTTTCAGGCCAGCTGGCCTACACAGTGAGAACCTATTTCAAAAACAAGGAAGGTGAATATACCATAGAGCAGAGTGTTTTTCCAAATGTTGCGACGAACTGTTTGTATTGTGTAAATCTGTACCGTATTTATGTCCTTTGGGATGACTTAATCTAACTCACATTTTTGGAGTGAGTACACTTAATGTCCACCCTCTCTGTCTTTTCAAAACCATCCATCGAAGTCCATGTTTCATGACACATCTCTGAGCTTCTGTCCGGTAGCTGGAATTCTGTAGCCCTTGATCATCATCCTCCCATCTCTCTCCCTTATGGATCTGCGTCTCCCACTCTTGACGCCTCCGCCACTCAAACCCCACCAACCAGCATCTTGCTGTTCCTAGGAGAAAACAGCTTCAGATTCTACATGACTGAGACCATGGGTATCTGTCATTGTTTAAAGATGAAGTATTTGTCTTCAAAGTTACGTATGTTGGGTTATGTGTCCATGACCACAGGTGCCCCCCCCCCCCGGAAACCAGAGCTATAGGCTTCCCTGCAGCTTGGGTTCCAGGCACTGTAGCTGTCAGGAGACTGAACTCTGTCCTCTGCAAAAGCCATAGCGGCTCTCAGCCCCTGAGCCATCCCCATCCCCCGTGCTTGCCTTCCTCTTTAGCGTATTGCATGTGTGCATCCATATTGTAGTAAATGATTCACTGTGCGTGAGCCCCATCCTCCATGTGCTTGGTCCATTCGTCTGCTGGTGAGGTCGCGTATCACTGCTATGGAAATGATGCTGGAAGAGCGGTGGGAGTGTAAATGTCTCTTGCAGATACTGATGTTATTTCCTTTGTGTGTATTCCCCTCAGCCGTGGGATCCATGGATCAGTGTGAGGTCTGTTTGTAATTGAAAATCTGCCACATTGTTTTCTGCAATGACTGTGAAGTTACATTTCCTCCATGATGTTCTTTTTCTTCTATATTCTCTACATTATGTTTTGTTTTCTGATAATGGTCAGTGTTTTTAAAAAGATTCATATTCATTATTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTGAGTGTTGTGCCTACATAACCTATGGCTCCTTGTGCATACCTGGTCGTGTAGGTGATCCGAAGAGTGTGTCAAATCCCTTGAAATTGGAGTTAGAACTGGTTGTGAACCACCATGTGGGTGCTGGGAACCCTAGCCTCTGCAAGAGCAACAAGCACTCTAAACAAACCTCTTTGCTAAGTCTCTGGGCTGCTGTAACTGACACTCTTAATGGGCTTGAGGTGGCCTCTCTTTGTGATTTTAATGACTCTCATTCTGATGCTAATTTTTCATATAACTATTAATAGGCCATATTGATGTTCTGTTTGGGTAAGTGTCTATTTCCAGCTTGCCTGTTCCTTAACGAGGAAGTTTCCCAGTCACTGAGTTGTCTGCATTCCTGATGAAGCTGCTGTGCAGGAGTTTAGCTGTCCCCTCCTAGTCCGATGCAGTTTGCAGTTATTCCCTCCCGGTCTCTAGATTATCCTGGTACCATGTTGATTGTTTCCTTGGTGGTGTAAAGGTTTTTAGTTTGATACAAATGGTCGTATTTGTCCATTTTGCTTCTGTTGCTTGTGTTTTTAGAGTAATGCCCAATATGTCCACTGTCCTGGAGGCTTCCCTGTATGTTTCTTCCTAGTGGTGTCAGTTCGTAAATTTTAATCTGTTTTGGGTTGACTTTTGCATGTGGAGTGACTGAAGGTCTAGTGTCATTCTCATGAACGTTAATATTGACTTTTTGCCAGCTCTTCTGATTATAGATGCTGCCTTGGAGCTCATGTAGACCAGGTTGGCTGAGGACTTTGAACAAGCTCCCTGTCTCTGCCTCCCCAGAGCTAGAATTATAGACCTCAGCCACCATATCCAGCAGGACTTCCTGTACTGTTAGCAATGGTCTTTGGGATCACAAACTTTATGAAGCATTGGCAGTTATAAGTGTCACAAGGTCACAGACTAACTATCAAAATGTGGGCAGGGAGATGGCTTGAGTTATCCTATTTCTTCTCAAATGATTTATGATTGACAGTAAGAAATGAGGAGGGCTGGTGAGATGGCTCAGTTGAGTGGGTAAGAGCACCCGGCAGCTCTTAGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAACAACCACATGATGGCTCACAACCATCCGTAATGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAGTGTACTTACATATAATAAATAAATAAATAAATAAATAAATCTTTAAAAAAAATGAGGAAACTTTCTCAAAAGGGTTACCGGATGTGACAGGAATAGATGTTGTGGAAAGTCTCAGGTATTTTAGGCTCATTTAACCCTCTACACCATTTTAACAGCTCTCTTGCTCTAGCCAATTGTATACTTGTTTTTGCCGCAGTAACTTTACTGGCTGTAAATGTACTTTGGCTTACTTGTTTAAGGTTGGGAAACCAAATGGTAGAGAAAAAGCTGTATTTATTGTGAGGATGCATAAAAAAAACCCTTAACGTAAAGAAATGTAGCTTAAACAGAAGGGGAACGGTAGCAGAGCCATCGTGTCAGCATGAGTTCCAGTGACTGACAGCGCCTAGGCTTTAAAGTAGCCTTTTCTCAGTGATTTTTTTTTCTGACATTTTATGGGCTTGTTCTTTTGGCAGTCTTAGAATCTTTTCATAACGTAGTTTCAAGACATTCCTGACAAACCAGGAAGTCTCATGGCTGAATGTTGCTTAGGGATAAGTCTTTCAAGACAACTCATCAGATACTCTGATATTCAGAAATTGACCTGCTCAAAGTGCCGTTGTGTGACAATAAAGAGCTTCAAGGAAGCTGGCAGCATTCAGTCCTTGGGAGGCTGACTCGCTGCTGCTGAGAAGGCTAAATTCATCCTGCAGTGTCTCTTTTCTTTGATAACTCCACCCATACGACTCAGAACACAAAGAGGTGCACTTCTTGCAGGCACCGAACTGCGCAGTCCCAGCCCTCTTATGGGAAGATGGGGGTGGAGACAAGAGAATCTCTGGCAGGCTGGCTAGCCTAGTGTACACAAAGGGAAGGAAGGATAAAGATAGAAGGAAAATTTGTGTGTGAATACTGTGGGAATATAAAATGTAAAATTTCATAAGATTATTAGATGTGTATTGAGATTGGGCATGGAGATGCATGGCTGCTGTGGAGTTCAGGGCCAGCCTGATACACACAAGATTCTGTTTCAAAAATAGAACTAAACAAACAACCCCACAGTGGATTGCACCAAGGCTTAGACCTGTTGGCTGGAGCACTGGGTCCCCATTTGGTGATGACTGCTCCCTGGTGCAGCATCTTAGGGAGGTCTGAGGGTTGTGTGTGCGGCCCAGAGCTTGAGAGTAGAGGGTCAGTGCTGCTGAGTAGCACAGAGCACAAGATGGTCCTCACACAGCCCAAGACAGAACAGTTGTGTCAGCCAGGCTGAGGTTGAGAAACCCAGCTCTAAGATCAAAAGACCTAGGACACCCCTAAAGAATTTAAAATAATTTTGTGCAAAATATCTCATAATATGGAAAGAGGGAAACATATCAAACTCACCTCCTGTGACAGGATGTTTTACAGCTAATTATCTCCATAAAGGATCATGGCTTAATTGAGATGACGTAAGCGTTATCATAGATGAGGGAAGGTTCTCAGGAGAGTGGTCCATGGTGCACAGTCCCATTCACTAACAGTGGGCACAGAATGCTGGACGCTGCCTGAGCATCACAGCTGCAGCCCCTCCAGCCTCGCTGTGCTTCAGCCCTGAGTTTACACAGGAGGGGCCGCCTGGATGCTGTGAGCCCCTGTGAGCCTTGATAGGTGGGGTTCCAGTGTGAAGATCTGAGCTCTGCGCACAGTAGGAGGAGCGGCCCAGGTGCAGGGTGAGCTGGAGCTCAGGGTGGAAGATGGATCCCTTCTGCTGGCCTCTTCTGGAGGAGTTCAAGGCAGACATGTTTGTGCCCTGCACTCCCACACTGCCCCCTTGGCCGTGGGTTGTCTGGGTTAGGGGGGGATTGGCTTTGTGTAGACTCCTGTGTGCTTCCAATTTGTGTGTGGGAGGCTGTGAGCGGTGGGAGGGGAGAGAGTGAGTGGGGAGGCTTGAGAAATAAGTGTAGTCGATGACATCACAGTGACAGAAGTCAGCCTGGGGACATCAAGTCACAATGCAGTGAATGGCTTTCTTTTTGTCCCCCAG
Seq C2 exon
GGGAGGAAGCCTGAAGAAGAATGGCCAACTCTAGTTCTCAACACATGGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037640-Zfp60:NM_009560:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: