HsaINT0188449 @ hg38
Intron Retention
Gene
ENSG00000204524 | ZNF805
Description
zinc finger protein 805 [Source:HGNC Symbol;Acc:HGNC:23272]
Coordinates
chr19:57248605-57255135:+
Coord C1 exon
chr19:57248605-57248700
Coord A exon
chr19:57248701-57253072
Coord C2 exon
chr19:57253073-57255135
Length
4372 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTGTGTTGGATTTCTTTCAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGTGTCCTGTTCCCAGACCTGAGCTGATCTACCACCTAGAGCATGGGCAGGAGCCATGGACCAGGAAGGAAGACCTCTCCCAAGGCACCTGTCCAG
Seq A exon
GTAGGAGCCAAGATCTGGGCAGGTCGGAGTCCCTGCTGGCTTGAGACTTCGAGGAGACCACTGGCCCTGGGATCTCTTGGGAAGCTTCTCACTGTGGCTTCTCTAAGGGTTTGGGAGCCTTGGAGCCCTTTAACCTGTGGTTTCTCCGTCCTCCCAGCCCCATCGCACTTGTCGCCACTCCTGGGGAGGAGTGAGGTGTGTGAACTGAGACTGGTCCTGGGGCTGCAGCCTTGTGTGCCGGAACCCTGGTTAGCCAGTCATCTACTCTGTGACCCCAGTGAAGTTTGTATATGAGTTTGGCTAAGTTAATACCAACTGCTGTATCCAACAAACTCCAAAATTTAAATGATTCACACATGAAAACTCTTTTTCACTCATACCAAGGTCTGTGTGGGTCAGCAGGGAACTCTGTACCACACAGTTATTCAGGACCTAGAGTCCTTCTGTCATCAACCTGTTGCTTTAAGGTTGTCCTGACATCTTCTTGCTGGTAGAGAATTAAGGGAATAAGGAAAGTCATACCCACTTCCAGACCTCCCCTCACATCTCACCCATGGGAACTGGGCATTTGGCTGTACTTGGGTCCATGAGTCTAGGAATTGTGGCTGAGCTGCCTGTCCAAGGAGAAGAGCAGATGGTCTGGTGAGCACCTACTCAGTCCACTACACTCAGTCTGTTCCTGAAAAATGATATTAGAAATTATTTTTATAAAAAACAAAAAAGAAAAACATTATTTTTATGCCATTGGGCAGTTTGAAGTTGTAATCATGTGATACATTAATGCATAAAACTGCATAGTTTCTGAGCCATAGTAAGTGACTTATCAAAATAAGCTATGAGTGTTACTCATGTCATATAAACATTGATGAGTGATGATACGTTACATTTCCTTCTGAACTCTGGGGAATAGGGCCTTTCTTACTCTCCCAATTTCTCTTTCCACTTATATTCTGCCTATCAGCCTCTCCCACCTTCTCCTTCCACCCATTCCCTGAGTGTCAATCAGACACTAAGAAGCAGTAGTTTGCCCATGTCTTCCTATATCTCCTGTTTTCCAAAAACCTCAGGGTGACATTTGACCTTCTGTGTCCCACACTCAGGCTGCTGAGGGCACTGAGGCCATCTGTCATGTGTGTGGATTGGTGCCACTGCAGAGCCTTGGCCTCTGCCCGCGTGGGTTCCTTGAGCTGCTCATCCAACCCTGAGTGTCTGTGCAGTCCCTGTTCAGCCCTTCAGAGTCTGTTCCAGATTGTCCCCTCCTCAGTGCCACATCTGCACTTGAAAATCTCAAAAGCACAAAACTCAACATGCCTAACAAGGAACCCATGATCTTGCTCACTCCTGCCACCTCCCAAGTTTCCGTGAATGGTTCTGCCATCCAGGCAGATTAGGGGACTGGCCCCAACCTCAGACAAGTCAACCCCTCCACCTCCATGAGTCCCTGCATCCAGCCTATCTCCACAGCCTTTCGATTTCACGTCATGCATGCCTCCTGAATTCATCCCTCTATCACCTCCATGAGACCTATCCTTCTGCTTTTTTCTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGTTTCTCCTGCCTCAGCCTTCCGAATAGCTGGGATTATAGGCATGCACCACCACATCCGGCTAATTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCGGGCCCGGCCCCCTTATGGTCTTACTCTAAACTCTTATCATCTTTTTTCTAGGGGATGTTAATAGACTCCCAAAACTTAATCTCTGTATCTGCTTTGTGCCTCTGGTCAGCTCTTTGTCCTGCGTGGGGTACTCCAGCATTCAGACCTTGTTCCAGACAGTTAATATTTCCCCAGCAACTCAGCATATGACTGCTGATGTATTAGCAGGTTTTCGTGTTGACAGTGTCATCTACTTCTATTGTTTAATCGGCAGTCCTTACACATTCCTCTCAACCTCTCATATCGGTAGCTTCTCTTTTCCCCTGGTGGAAGAGGTCTTACCCTTGGCCACGGCCAGTTTTTTCAAGAGTTTATATTATACGTTTTCATGGACGTTTTTTCTTCACTTATATTCCGCTTGTTTTGTAACTTCATCCTTTCTGTACTCAACATAAAAATATGCTCAACTTCCTTACCCTTGAAGAAAATTCAACAATTCAGTGTTCATGGTTCACAGTGTATTCATATATTCATTCACTGTCTGAGCACTTAATTGTTTACATGTTTTTATATCAGTGATGCTGTGGACATTTATGTATGTTGTTCATCTTTCACATGTGTAGGGACACATTTTTGATGTTTCTGGAGTGAAATAATTGGATTATAGATTATGCAAATGTTCTAGTTTGCAAGATCATTCTCATTGTTTTCTAAAGGGCCTATATCAAAAAATTCCTCTCAGGAATTTTTGGAAGGTTCCATTGATCCATATCCTATCTAATACTTGAAACTATAAGGCCCCTCAATTTTTGCCGATTAAATGGACACAAAATATTATCTGTTGTGCTCTTGATTTGCATTTTCCTCATTGGTAGGGTGGTTTAGTGTCTTTCATGATTCTGAGCCAATCTATATTTTCTTCTGTGAGATGTTATTTGGTGATAAATGCCTTTTTTTCAATTAACTTCTTTGGCTTTCTCTTTTTGATTTTATTTTTGTACATTATAGATACCTATCTTTTATCAGTTACATTTGCTGCCGGTATATTCTTCTAGTTTTTAATTTTGTCCTTCCACTCTTTTTAAAGTATCTTTTGTTCAATGAGTTCCTTACATAGCGTAGTCTGATTTATGTTTTTTTTTTACGTGATTAATGATTTTGTACCTTGTGGAAAAAATGTTGCTTTACCCTAATGTCAAAAAGGTATTCTTGTTTATTTTATTGTAAGTTGTAAAACTTGCCATTTGGCATTCAAGTCTTTATCAATCTGAAGTTGATTTTGAGTATAGAATGTGATAGAATACAATATTTCCATTCCCCGTGTTGGTAGCCAATTTTTCTAGCTCTAATTCCTTAGTAGTCTCTCATCACTGAGGTGCTGTGCCTCTTTGCCATCTACCAAAGCCCCATCTATGTGCAAGGGGATTTCTGAGCTCTCTGTTCTTCTTTATTCCCAGTTTGCATTATGTCTGTGCCAGAGTGGTACCTCTGCCTTATGAGCTCTGTCCTGAGAGTGGCACTGCTCTTCACAGCTGTCACCTAGGTCAGAATCTTGGGAATCAGTCCCCCTGTGCCTCATCTTTCCCTAGATTCTCATCACCACCACCCTCTCATGCACTGTAGCTCATTTGCATATTCTTTCTCCTAAGGCTATAGTGTCTTTCTCACATTCTCTCGTGACAAGTGGGACTTACTTCACTGGGTACCTTCTATTGGAAAACTGCCTTGATCTTTTTCTACCCAGGATTAGCCAAACTCAAGATAAGGACACAGTCCTCCAGGACTTTGTCAAGTCTACCCAAATCCTCTTAATTCCAACTGCAAATTCAGGGATTTCCTGAAACCAACCTTAGGTTTCATAACTTGCTAAAAAGACTCACAACACTTTCTAAAACCTATTATACTCACAGTTTTGTTTATTACAGACAAAGCATACAAATTAGAAGAGGACACGGGATGTGGGGCTGAAGGGGTTCCAAACACAAAGCTTCCTCAGTAACTTGTTACCCACCCAGCATTGAGTGTAAAATATGTGCACAGAGCATTGCAAACCCAGGAAACTCACTGGAGCTCTGGTTTTTAGAGTTTGTTGAGCTTCATTACACAAGCACGGTTAATCGAGACATTGCCCACATTGCCATGTGAAGTTTCCAGCCTTCGTCCCTTTTCCAGAGTTCAGCTGATATCTTGTGGCTCAGAGACCTAACCTTCTACTCACTGGTTGGTCTTTCTGGTGCCACCAGACCTCAGCCAGAGTCATCTATTTAGGATAAACTATTTAGGTACCTATAATGAGTTACCTTTATATAAATATTTAGTCTGGAATTGAAGCGATATCTCCACTCTAGGCCCTGTCCCCTCACCTGGTCTCTCTGCCTGGTCTCCCTTTCAAGGAGTCAGGAATCCAAGGAAAATAAAAGAAACAAATTATAGATCTGGGGTTCAAGATGGCAAAATATAACAGACATAAAGGCACCATTTATAACTTCATTTTTTTTACTGAAGTGGTGAGTTTGTTTCTTCTCTTTTTACATTACTAACAAGCCCTTCTGTGTGTTGGATTTCTTTCAG
Seq C2 exon
GTGACAAAGGAAAACCCAAGAGCACAGAACCTACCACCTGTGAGCTAGCCTTGTCTGAAGGAATCTCTTTTTGGGGACAACTAACACAAGGAGCTTCAGGGGACTCCCAGTTGGGGCAACCCAAGGATCAGGATGGGTTTTCAGAAATGCAGGGAGAACGCTTGAGACCAGGGTTAGATTCCCAAAAGGAGAAGCTTCCTGGAAAAATGAGCCCCAAACATGATGGTTTAGGGACAGCTGATAGTGTGTGTTCAAGGATTATACAGGATCGAGTCTCCTTAGGAGATGATGTCCATGACTGTGACTCACATGGATCAGGTAAAAATCCAGTTATTCAGGAAGAGGAAAATATCTTTAAATGCAATGAATGTGAAAAAGTGTTTAACAAGAAACGCCTGCTTGCTCGGCATGAGAGGATTCACTCTGGAGTGAAGCCCTATGAATGCACAGAGTGTGGAAAAACCTTTAGCAAGAGTACATACCTCCTGCAGCACCACATGGTCCACACTGGGGAGAAGCCCTATAAGTGCATGGAGTGTGGGAAGGCTTTTAATCGGAAGTCACACCTTACCCAGCACCAGCGGATTCACAGTGGAGAGAAGCCTTATAAGTGCAGTGAATGTGGAAAGGCCTTCACCCACCGCTCCACTTTTGTCTTGCATAACAGGAGCCACACTGGAGAAAAACCCTTTGTGTGCAAAGAGTGTGGCAAAGCCTTTCGAGATAGGCCAGGTTTCATTCGACACTACATCATCCACAGTGGTGAGAATCCCTACGAGTGCTTCGAATGTGGCAAGGTCTTCAAACACAGATCATACCTCATGTGGCACCAGCAGACTCATACCGGGGAGAAGCCCTATGAGTGCAGTGAATGTGGGAAGGCCTTCTGTGAGAGCGCAGCGCTGATTCACCACTATGTCATCCACACTGGAGAGAAGCCCTTTGAGTGCCTCGAGTGTGGGAAGGCTTTCAACCACCGATCCTACCTCAAAAGGCACCAGCGGATTCACACTGGGGAGAAGCCATATGTGTGTAGTGAATGCGGAAAGGCCTTCACCCACTGCTCTACTTTCATCTTGCATAAAAGGGCCCACACTGGAGAAAAACCTTTCGAGTGCAAAGAGTGTGGGAAAGCCTTTAGCAATAGGGCAGACCTCATTCGCCACTTCAGCATCCACACTGGAGAGAAGCCCTATGAGTGCATGGAGTGTGGAAAGGCCTTCAACCGCAGGTCAGGCCTCACAAGGCACCAGCGGATTCATAGTGGAGAGAAGCCCTATGAATGCATCGAGTGTGGGAAAACATTTTGCTGGAGCACAAACCTCATTCGACACTCTATCATCCACACTGGAGAGAAGCCGTATGAGTGCAGTGAATGTGGAAAGGCCTTCAGTCGCAGCTCGTCCCTCACTCAGCATCAAAGGATGCATACTGGGAGAAATCCTATCAGTGTAACAGATGTGGGAAGACCTTTTACAAGTGGGCAGACCTCAGTCAACATCCAAGAACTTTTATTGGGGAAAAACTTTTTGAATGTCACCACTGAGGAAAATCTTTTGCAAGAGGAAGCATCTTACATGGCATCTGATCGTACATACCAAAGAGAAACCCCACAAGTGTCTTCACTGTGAGAAAACCTTCTGTTGCCAAATGTCATTTGTCACCTAAGGAGTCATATTAGAAAATCACGCAGCTTAGAGCCTTATTCTCCATCCGAATTCATCCTGGAAAAACACCCAGTGGTTATTACGCACTTGGGAAAACCTTTAGCTCCATCTTTCTCATTAGTTTACAGTGCAATGTTATCTCAGGAATTTTTATAAACAGAAAGAGGTGACATAGAAAAGAAAATGAAATGCAGACACTGCTTTTATACTGTTGTCTTGTATGTACATTTCTGTCCTGTGTCAGGAAAGTTAGTAAGGGAAGGTCTGGAAACTTACTCAATGTCTTTGTTCTACAACATTGTCTCTTCTTAAGAAGCATTGTTTTTATGAGAAATAATGAAGCCTTGAGTTATGAAATACTTTTATATTTAAGGATTAAAAGAAACATGAATGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204524:ENST00000354309:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains