HsaINT0188473 @ hg19

Intron Retention

Gene

ENSG00000180257 | ZNF816

Description

zinc finger protein 816 [Source:HGNC Symbol;Acc:26995]

Coordinates

chr19:53452632-53456130:-

Coord C1 exon

chr19:53456004-53456130

Coord A exon

chr19:53454838-53456003

Coord C2 exon

chr19:53452632-53454837

Length

1166 bp

Sequences

Splice sites

5' ss Seq

TGGGTGAGG

5' ss Score

6.74

3' ss Seq

TTGGTCTTTATATTTTTTAGATA

3' ss Score

8.9

Exon sequences

Seq C1 exon

GGACGCTTGACTTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGG

Seq A exon

GTGAGGAAAATGTCCCTCCAGACATGAGGAATCTGCACTTGTCTATCTTGGCTCTTTCTGGTTTTATATTCTCTTTTGTGATTTTGCCCCATACATGCTTTTGATGTACATGTCATTGTTTTCTGCGGTGATGACCCTCCTATCTGTCATGGACAGCTTCTTAGAGACTCTTCTTTGGAGTGGTTTTACATAAAAACAGAAAATTCACGAACACTTTGACTAATACAATTGAACATCATCCTGCTCTAGGAAGAGATGTCCCTGGAAGCCCTGAGCAGAATGGTCAGCATGGCCCAGGATACGAGATAGAAAGCATGACACTGATTGACAAGTGTTTCCAGCTGTGCTTGTGGTTTTGTTTTCTTTTTGTTTGTTTGTTTTCAGACAGAGTCTCCCTCTGTTGAACAGACTGGAGTGCAGAGTCTTGATCTCATCTTATTGCAACCTCTGCATCCTGAGTTCAAGCAATTCTTGTACTTCAGCCTCTCAACCTAACTGGAATTACAGGCACATGCCTCCATACCTGGCAGATTTTCATATTTTTATTAGACATAGGGTATCACCATGTTGGCCAAGTTGGTCTTGAACTCCTGGCCTCAAGCAATTTGCCCACCTCAGCCTCGAAGTGTTGGGATTACAGGCGTGAGCCACCATGCTTGGCCTTTCATTCTGGTTTTTGAGAACCATCACAGAAGCATCTCTCACTAGCACTGTGACAGTGTTCATCACATAAACGAATGGTCATCTTCTCTAAGCAGTAGTCACTGCTGTAGAAATTCCTCTTAGGGAGGACATCATTCAGGCTCACTGCCTCATATATATGAGGCTCTTGACTGAACTCTTTTTTTTTTCTACACAGAATTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGTGGTGATCTCCGCATGCTGCAACCTCTGCCTCCTGGCTTCAAGCAATTCTGCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCATGACTGGCTAATTTTTGTATGTTCAGTAGAGACAGTGTGTTCTTAAACTATGAAGATCACATTTGGGAAGTTTAAAATAAGTATTGCTTTTTGTGTAATTTTTACACATCTGAATATCAACTATTATTTACCATCTGTACTTAATTGGAAACCTATTGGTCTTTATATTTTTTAG

Seq C2 exon

ATAGCTCTTTAAAATCCATGATGGAGTTCTCATCAACCAGGCACAGTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCACATTGGAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACTAAAGGGAAAATTAGTAACCAATTGGACAAGTCTATCGGTGCTTCCTCAGCTTCAGAATCCCAAAGAATTTCTTGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCATTCACACAAATACAGGAAATATGCATGAGAGAAAAACCTTGCCAAAGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAGGAGACACCACATAACCCATTCAAGAGAGAGAGAATATAAATGTGATGTATGTGGCAAGATCTTTAATCAGAAGCAATACATTGTATATCATCATAGATGTCACACTGGTGAGAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCACTCAGATGTCATCCCTTGTATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTGAGAAGTCATCCCTTAGATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACTTTTGGTCGAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAATCATCCCTTCAATGCCATCATATACTTCACACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAATGTTTACATTCGCAGATCACACCTTGAAAGACATAGGAAGATTCATACTGGAGAGGGATCATACAAATGTAAGGTTTGTGACAAGGTTTTCCGGAGTGATTCATACCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACAAGTGTAATAAATGTGGCAGGAGTTTCAGTCGGAAGTCATCCCTTCAATACCATCATACACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTCGAAGAGAAAACCTTGCACGTCATCATAGACTTCATGCTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAGATCACACCTTGAAAGACATAGGAGAATTCATACTGGGGAAAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTGCAAACCATACGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATAAATGTGCGAAGGTTTTTAATCAAAAAGGAATCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAGCAAGCCTTGCAAAACATCAGAGAGTTCATACTGCAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTACTGGACAGTCAACACTTATTCACCATCAAGCAATCCATGGGTGTAGGGAAACTTTACAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTACAGAATCCATATTGAAGAGAGATCTACAAGTGTAATAAATGTGGCAAATTTTTCAGACGTCATTCATAACTTGTAGTTCATCAGTGAACTCATACTGGAGAGAAACCTTACAAATATCATGACTGTGACAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCATGTTCACACCTCATTAGACATCAGAGAATTCATACTGGACAGATGCCTTACAAATGTAAGGGTGGCAAGGTCTTCACTCTGTGGTCATTCCATGCAGAACATCAGAAAATTCATTTTTGAGATAATTGTTCCAAATAAAATGAATATAAAAAATCATAAAACTTTAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000180257-ZNF816:NM_001031665:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.105

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3),PF029069=Fe_hyd_lg_C=FE(70.0=100)

A:

NA

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF097235=Zn-ribbon_8=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)

Main Inclusion Isoform:

ENSP00000470838