HsaINT0188473 @ hg38
Intron Retention
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:HGNC:26995]
Coordinates
chr19:52949442-52952877:-
Coord C1 exon
chr19:52952751-52952877
Coord A exon
chr19:52951585-52952750
Coord C2 exon
chr19:52949442-52951584
Length
1166 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTGGTCTTTATATTTTTTAGATA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGACGCTTGACTTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGG
Seq A exon
GTGAGGAAAATGTCCCTCCAGACATGAGGAATCTGCACTTGTCTATCTTGGCTCTTTCTGGTTTTATATTCTCTTTTGTGATTTTGCCCCATACATGCTTTTGATGTACATGTCATTGTTTTCTGCGGTGATGACCCTCCTATCTGTCATGGACAGCTTCTTAGAGACTCTTCTTTGGAGTGGTTTTACATAAAAACAGAAAATTCACGAACACTTTGACTAATACAATTGAACATCATCCTGCTCTAGGAAGAGATGTCCCTGGAAGCCCTGAGCAGAATGGTCAGCATGGCCCAGGATACGAGATAGAAAGCATGACACTGATTGACAAGTGTTTCCAGCTGTGCTTGTGGTTTTGTTTTCTTTTTGTTTGTTTGTTTTCAGACAGAGTCTCCCTCTGTTGAACAGACTGGAGTGCAGAGTCTTGATCTCATCTTATTGCAACCTCTGCATCCTGAGTTCAAGCAATTCTTGTACTTCAGCCTCTCAACCTAACTGGAATTACAGGCACATGCCTCCATACCTGGCAGATTTTCATATTTTTATTAGACATAGGGTATCACCATGTTGGCCAAGTTGGTCTTGAACTCCTGGCCTCAAGCAATTTGCCCACCTCAGCCTCGAAGTGTTGGGATTACAGGCGTGAGCCACCATGCTTGGCCTTTCATTCTGGTTTTTGAGAACCATCACAGAAGCATCTCTCACTAGCACTGTGACAGTGTTCATCACATAAACGAATGGTCATCTTCTCTAAGCAGTAGTCACTGCTGTAGAAATTCCTCTTAGGGAGGACATCATTCAGGCTCACTGCCTCATATATATGAGGCTCTTGACTGAACTCTTTTTTTTTTCTACACAGAATTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGTGGTGATCTCCGCATGCTGCAACCTCTGCCTCCTGGCTTCAAGCAATTCTGCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCATGACTGGCTAATTTTTGTATGTTCAGTAGAGACAGTGTGTTCTTAAACTATGAAGATCACATTTGGGAAGTTTAAAATAAGTATTGCTTTTTGTGTAATTTTTACACATCTGAATATCAACTATTATTTACCATCTGTACTTAATTGGAAACCTATTGGTCTTTATATTTTTTAG
Seq C2 exon
ATAGCTCTTTAAAATCCATGATGGAGTTCTCATCAACCAGGCACAGTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCACATTGGAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACTAAAGGGAAAATTAGTAACCAATTGGACAAGTCTATCGGTGCTTCCTCAGCTTCAGAATCCCAAAGAATTTCTTGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCATTCACACAAATACAGGAAATATGCATGAGAGAAAAACCTTGCCAAAGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAGGAGACACCACATAACCCATTCAAGAGAGAGAGAATATAAATGTGATGTATGTGGCAAGATCTTTAATCAGAAGCAATACATTGTATATCATCATAGATGTCACACTGGTGAGAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCACTCAGATGTCATCCCTTGTATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTGAGAAGTCATCCCTTAGATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACTTTTGGTCGAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAATCATCCCTTCAATGCCATCATATACTTCACACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAATGTTTACATTCGCAGATCACACCTTGAAAGACATAGGAAGATTCATACTGGAGAGGGATCATACAAATGTAAGGTTTGTGACAAGGTTTTCCGGAGTGATTCATACCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACAAGTGTAATAAATGTGGCAGGAGTTTCAGTCGGAAGTCATCCCTTCAATACCATCATACACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTCGAAGAGAAAACCTTGCACGTCATCATAGACTTCATGCTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAGATCACACCTTGAAAGACATAGGAGAATTCATACTGGGGAAAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTGCAAACCATACGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATAAATGTGCGAAGGTTTTTAATCAAAAAGGAATCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAGCAAGCCTTGCAAAACATCAGAGAGTTCATACTGCAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTACTGGACAGTCAACACTTATTCACCATCAAGCAATCCATGGGTGTAGGGAAACTTTACAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTACAGAATCCATATTGAAGAGAGATCTACAAGTGTAATAAATGTGGCAAATTTTTCAGACGTCATTCATAACTTGTAGTTCATCAGTGAACTCATACTGGAGAGAAACCTTACAAATATCATGACTGTGACAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCATGTTCACACCTCATTAGACATCAGAGAATTCATACTGGACAGATGCCTTACAAATGTAAGGGTGGCAAGGTCTTCACTCTGTGGTCATTCCATGCAGAACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257:ENST00000444460:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(20.5=18.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGTGGAAATGCCTGA
R:
TTCCAGCATGCCTGTGATCAC
Band lengths:
342-1508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains