HsaINT0188524 @ hg19
Intron Retention
Gene
ENSG00000196267 | ZNF836
Description
zinc finger protein 836 [Source:HGNC Symbol;Acc:34333]
Coordinates
chr19:52658125-52663844:-
Coord C1 exon
chr19:52663718-52663844
Coord A exon
chr19:52660794-52663717
Coord C2 exon
chr19:52658125-52660793
Length
2924 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGTTCATTATATTTTGTAGGTA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GGACCTTTGACATTCAGGGATGTAGCCATAGAATTCTCTCAGGAGGAGTGGAAATCCCTGGACCCTGTGCAGAAAGCTTTGTACTGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTTCCTGG
Seq A exon
GTAAGGATAATTTTGCTCTAGAAGTTAAGATCTGCCCTCGTGTATTTTTGTATTTTCTCTGTTGTCTTTCTTGGGAGCCCTTCCATTATTTGACTGAGACTGAAGCCTTGTTGACTCACAAATAAAAAGCTTCATAATGCTGCATCTGGCCTTTCATTTCCCATATCATCACACTATCCCCTTTTTGAATGTCTTCCCTTGTTGTCCTGTGCCCTTAGTAGAATTCCCATATTTAAGTATTAGTCAGTATAATGGTACTTTTTTTTTTTTTTTTTTTTAATGGAGACAGAGTCTAGCTTTGTCTCCCAGGCTGGAGTGCAGTGGCGTGAACCCAACTCACTGCAACCTCCGCCTTCTGAGTTCAAGCAATTCTCCTACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCTCACACCACCACTCCCGGCTAATTTTTTGTATTTTAGTAGTGACGGAGTTTCACCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCGGCAGTCTGCCCGCCTTGGCCTCCCGAAGTGCTAGGATTACAGGCGTGAGTCACCACGCTACTTCTAAATTAGTATCTCTCTTTTCTTCCAAAGTCAGGATTTTAACTATTCTTTGGGCAATTATATACCCACAGCTCTGCAAGCACAAACGCTGCTGCCCCATGCTTATAACTCTTTGCCCTCCCCTCTTGCCCTTCCTCCTCCCTGCCTCTTCCAAACATATTACTTTGGTCCAGATGGACTACCCAGTTACTTACTAGCATATTAATTTTACACTCCCATTATTGCAGTACTCCCTCACCTTCCATGTTACACTCAGTGTAACTCATTCACTTGACAACTTTCTGAGAACACTGTCTATGTCAATATGTGCAGGGGATGATGGCTCAGATACTGTTATTCATGAAGGGTGACTGAATAATGTTTTGGCAACACACATTGGCTCTTGAAGTATTTCTTTCCACACTCTTGGTATTTGGAGTGACCAGTTATCTGCACTGACTGTTTGGCCAGTTTTATTTAAAAACATGTTTGATCCCGGAAACCCAGGTTCATGTCTTACTTTCTTCGTAATTTGGGTGTAGATACATAAATCCTGTGGGCAGTCTTACTGTCCTTATTTGTAAAATAGTGATAATTTATCTTAAGATTTTTTAAAACAAGTTAGTGCTGTTTGCTAGCTTAGAATATTGCATGTTTTATAGTAAAGACTCACAAATTTCTTTGTTTAATAAGGTATATCAACATTATTTCATGTTTATAATGAGATGGCATATTAGCTTTAACTTAATGTGGTTAGGTATAGCAGATACCATAGATAGGGTCGTTTAAACAACAGGAAGTCACTTTTCACAGATCTGGGTGATGAGCAGTCCACATGTCAGAGCCAGTCACCTTGGTTCTTGGTGTGGGCCATTTTCCTGGTGTATCATGACTAACTCTTTCTGTGTCCTCACATGGCAGAAGGATTGCCGTGCAAAAAGCAAAAGCTTTTTCACATCTACTCAAATTCCTATTCCGTTCCTGAAATTCTATCTACCATGGTGACCTAATTGCCTCCCAAAGTTCACACCTCCAAGTAATATTACATTGAGGATTAGGACCCCAACATACGAGTTTTGGCAGACATAAGTCAATATAGCTGACTTGCACTGCTTGTTAGTGTTGCAAATGTCTATTTTTTATGGAAATAGATAGTTTTTTGTTTGTTTGTTTGTTTTTCCGAGACAGAGTCTTGCTCTGTCACCCAGACTGGAGTGCTGTGGCGCGATCTCAGCTCACTACAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTACCTCAGCATCCCAAGTAGCTGGGATTACAGGTGCACACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCATGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCAGAAATAGGTAGTTTTAGAACAGGTTTAATACTTATATAATAAGTATTCAGAAAAATAACTTAGTGTTATAACTTCAAAAAATTCTTTCTCATTTTCCCAGTACTATTTTTGATTTATAATTCTAGCTTGCCATTTATATAGAACATTAATTAGTTGAACTTGTTGATATTTAGCTGTAATTTGACATTTATTCATGCACAATAAATATGAAGTAAATATATATGTATATAACTATTTTCTCTTCTGAGAGAGCCATATGTTTGCTGCCAGTTGATGTATGATTTGGGGGCATGGTGGAAAAATACTTGTTTTAGTGCTAATATATGTTTGCACAACATGAGTCTTTCAGTCATTGAATGTTTGAAACTAGGTTTCCTTAAAATTAATTTGAATTACATGTGATTACTCTTTCTTTACTGAAGAATTCTACTCCTTTTTTATTTGTAAAAATAGAAGATCATTGTGGTAAAGTTTGGTAACTGTCTAGTATAAACGTTACTTTTAGTGTAGTATGTTTTCAATATAAAATATTTATGAATAGTAGTTATTTAAAAAAAAACAAATAATACTAGTTATTTTTAAAATCTATGTTCGGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGTGGGGCCGAGGTGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGGGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCCAGGTGTGGTGATGTGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATAGCTCGAACCCAGGAGGTGGAGGTCACAGTGAGCTGAGATTGTGCCACTCCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCAACGAAAAAACTCCCATGTTCATTATATTTTGTAG
Seq C2 exon
GTATCCTTCCTAAATGTATGACCAAGGAATTACCACCAATAGGGAACAGTAATACAGGAGAAAAATGCCAAACAGTGACGCTGGAAAGACATGAATGTTATGATGTTGAAAATTTTTACTTAAGGGAAATCCAGAAAAATCTACAGGACCTTGAGTTTCAATGGAAAGATGGTGAAATAAATTATAAAGAAGTGCCAATGACCTATAAAAACAATCTTAATGGTAAAAGAGGTCAACATAGTCAAGAGGATGTAGAAAACAAATGTATTGAAAATCAGCTTACATTAAGCTTTCAGTCACGTCTGACTGAACTGCAGAAATTTCAAACTGAAGGGAAAATTTATGAGTGTAACCAATCTGAGAAGACAGTTAATAACAGTTCCCTAGTTTCACCACTTCAAAGAATTCTTCCTAGTGTCCAAACCAACATTTCTAAAAAATATGAGAATGAGTTTTTGCAGCTGTCATTACCCACCCAACTTGAGAAAACACACATTAGGGAAAAACCTTATATGTGTAAAGGGTGTGGCAAAGCCTTTAGAGTGTCTTCAAGTCTTATTAACCATCAGATGGTACATACTACAGAGAAACCTTACAAATGCAATGAATGTGGCAAAGCCTTTCATCGGGGCTCACTACTAACTATACATCAGATAGTCCATACAAGGGGGAAGCCATATCAATGTGGTGTATGTGGCAAGATCTTCAGACAAAATTCAGATCTTGTAAATCACCGGAGAAGTCACACTGGAGAGAAACCGTACAAATGTAATGAATGTGGCAAGTCCTTTAGTCAAAGTTATAACCTTGCAATACATCAGAGAATTCACACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGGAAAACCTTCAAACAAGGCTCATGCCTCACTACACATCAGATAATCCATACAGGAGAGAAACCATATCAATGTGATATATGTGGCAAGGTCTTCAGGCAGAATTCTAATCTTGTAAATCACCAGAGAATCCACACTGGAGAGAAACCATACAAATGCAACATATGTGGAAAGTCCTTTAGTCAAAGTTCCAACCTGGCAACTCATCAGACAGTTCATAGTGGAAACAAACCTTACAAATGTGATGAGTGTGGCAAAACCTTTAAACGGAGCTCCAGCCTCACTACACATCAGATAATCCATACAGGAGAGAAACCATATACATGTGATGTATGCGACAAGGTCTTCAGTCAACGTTCACAACTTGCAAGGCACCAGAGAAGTCATACTGGAGAGAAACCTTACAAATGCAATGAATGTGGCAAGGTCTTCAGTCAGACTTCACATCTTGTGGGGCATCGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGATAAATGTGGTAAAGCCTTTAAACAGGGCTCATTACTCACTCGACATAAGATAATTCATACCAGAGAGAAACGTTACCAATGCGGTGAATGTGGAAAGGTCTTTAGTGAAAATTCATGCCTTGTAAGACATTTAAGAATTCATACTGGGGAGCAACCTTACAAATGTAATGTGTGTGGCAAGGTCTTCAATTACAGTGGAAACCTTTCAATTCATAAGAGAATACATACGGGAGAGAAACCTTTCCAATGTAATGAATGTGGCACAGTCTTCAGGAACTACTCATGCCTAGCACGTCATCTAAGAATTCATACTGGGCAGAAACCTTACAAATGTAATGTGTGTGGCAAGGTCTTCAATGACAGTGGAAACCTTTCAAATCATAAGAGAATTCATACTGGAGAGAAGCCGTTTCAATGTAACGAATGCGGCAAGGTTTTCAGTTACTACTCATGCCTAGCACGTCATCGGAAAATTCATACCGGAGAGAAACCTTACAAATGTAATGATTGTGGCAAAGCCTATACTCAGCGTTCAAGCCTCACTAAACATCTGATAATTCATACTGGAGAGAAACCTTACAATTGTAATGAGTTTGGAGGGGCATTTATCCAAAGTTCAAAACTTGCAAGATATCACAGAAATCCTACTGGGGAGAAACCACACAAATGTAGCCATTGTGGTAGAACTTTTAGTCATATAACAGGCCTGACGTACCATCAGAGAAGGCATACTGGAGAGATGCCATACAAATGTATTGAATGTGGCCAGGTCTTTAATTCCACTTCGAACCTTGCAAGGCATCGGAGAATTCACACTGGAGAGAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTTCGTCATCAATCAACACTAGCACGTCATCGGAGTATTCATACTGGAGAGAAACCTTACGTGTGTAATGAGTGTGGCAAAGCCTTTAGAGTGCGTTCAATTCTGGTTAATCATCAGAAAATGCATACTGGGGACAAACCTTACAAATGTAATGAATGTGGTAAAGCTTTTATTGAAAGGTCAAAGCTGGTGTACCATCAAAGAAATCACACTGGAGAGAAGCCATACAAATGTATTGAATGTGGCAAGGCCTTTGGGCGGTTTTCTTGCCTCAACAAACACCAAATGATTCATTCTGGAGAAAAACCTTATAAATGTAATGAGTGTGGCAAATCTTTCATTAGTCGCTCAGGCCTCACTAAACATCAGACAAAACATACTGCAGAGAGTCTTAAAACAAAATTCAATGTGGAAAAGCCTTTAGATGTTCTCCTAACTTCTGGGTTCAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196267-ZNF836:NM_001102657:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF0013017=C1_1=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF0013017=C1_1=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF0013017=C1_1=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF097235=Zn-ribbon_8=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)