HsaINT0188557 @ hg38
Intron Retention
Gene
ENSG00000267041 | ZNF850
Description
zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
Coordinates
chr19:36762595-36772814:-
Coord C1 exon
chr19:36772725-36772814
Coord A exon
chr19:36762676-36772724
Coord C2 exon
chr19:36762595-36762675
Length
10049 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGTGTTTTATTCATTCCCAGCTC
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTTTGCTGTGCCGATTTAGCTGCCGCCGCGCCTTGGAGTCCTGAGGAACTTGGCTAGGCTGGCCCCGAGCGGAACCAGAGAATGCTGAGG
Seq A exon
GTGAGGAATCCGGCTCCGGTCCTTTTGTGTGTGGAGGGCTGAGGAGAGGAGTTTGCGTGTGTGATCGCGATGGCTGCCGTGGGTCTCCGTGGTCTGTGACTGTGGCTGTGTGGTGCTGACTCTGGGTGATCAGGTGGGCGCTTGTGACTGTGCGCGCCCGGAGTGGGTGTGTGTGTCCTGGACGACCCTCGTTGTGCGTGCGGATGTGAAGAACCGGTGACTGTGTGGTTGGACTGCGTGTCCCGGGGTGGGTGTGTGACTTTGCGTGTCTGTGCAGTACCTTGTGTGCGTGAGTTGCAGGTCTGTGGCTGTGCAAGTGCAACTTGTGTGGCCCCTTGGTGTATGTGAGAGAGGAGAGTGTGATTGGCTGTGAGGCAGTGGGTAAGTGGATATGCGGAGGCATGTGTGCGATTGGGACTTTGTGTGTCCCCTTGAGAGAAAAAACTCTTTAGGCAGTTAGGGTGGGACCTTGGTAAAAGTCCTTTAAACAGAGAAACAGCCTGAAAAATCAGGCTGCAGGCATACATAAGGAAAACTCCACAGGGGGGTTGTCCTGAAGACATTCCTCAGCTGCACTGATAAGGGACCGAGGCCCAACATAGAAACGCCTTTGTCCTTTGTGTGACCAGCGGGCTTCCACGAAATAGTCGCTTCTTTTGTGGGCATGTACACGGTGGGCTCTGTTAGATTTTGAAGGGAAGGCGAGGGTTAAAGAAAGAGAGAGAGTTGGCGGCTCTATGGCGGGGACCAACTAAATGCCAGAGCCCACTGCCGCTTCCAGGCTGGGGTAATTACAGGCCTGGGCAGGAGGGGTCTGGGCGGTATGGCTTGTTGCCTGGGAGAAAGTTGATAAGGATGTTTCTTGGGCTTTTGCCCAGCAGGATGTGATAAGGAAGTCAGGCGGTTGGGAAGGATGTTTCGCACAGCCCAAACCCGGGTGGAATGTTTCCCTCTGACCAGGGTCTGTGAAATGGTGGGGGCTTACGAAACGGTGCAGCTTGGACTAACAGGTTCCGGCGGCCACTTTCCTTTTTTGGACATGCTTTAGACTGTGAGCGCGGCCTCTTTGAATCATAACTTCACCCCCTCATTGGTCCCGGGCCAAGCTTTCACTTCAGCCCCTGATTGGTCCCGGGCCAAACTTTCACTTCAGCTCCTGATTGGTCCCGGCCCAAACTTTCACTTCAGCTCCTGATTGGTCCCGGGCCAAACTTTCACTTCAGCCCCTAATTGGTCCCGGGCCAAACTTTCACTTCAGCTCCTGATTGGTCCCGGGCCAAACTTTCACTTCAGCCCCTGATTGGTCCCGGGCCAAACTTTCACTTCAGCCCCTGATTGGTCCTGGGCCAAACTTTCACTTCAGCCTGGGATTGGTCCCGGGCTAAGGTCCCAGGGCCAAGCTGGGTAGTGCTTTCTTCAAGACAGCCCACGTTCCTCCCCTTCCCAGTTAATAAACCCCCCCAGATTCAGCCTCCTAGTTGGCAACCCTCTTTTGGGTCCCTCCGCTGGGGAGAGCTTTCTTCTTTTGCTTATTAAACTTCCGCTCCGACCTCATCCTTTGTGTCCCTGTTCCTTAATTTTCTTGGCCGTGAGAGAAAGAAGGCAAAAACAAGAGCCTTTACCCTAACAACTCAATTGCTGCAGAGATTAGTGCATATTCTATGTGGCATCACACGCCATAGCCCTGGGATTGAAAGCCATGCAGTTTATGGGATGGTGTTAATCTCAGTCCAAATAAGTGATAAGATCTTTCACTTTGCTATATTTTAGGGGTAGGAATGAGATTGGGGGCTCGATCAATAGTTTGTACCAATAACACCAGGGATTTGCCCAGTCATCTGTGAGTAAATGCTTGGGCCAGTTTCCATGTCTGTATTGAATTAAATACTCATACGGTTCTGTGATTTTCTCAAATACAGATTTGGTCTTTGTCCCTATTTCCTCGCATACAACTCCTAAAGTCCTTGGAATCTCTTAAGTGCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGGAGTCTCTCTCTGTCGCCCAGACTGAAGTGCAGTGGCGCAATCTCCAGTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAGTTCTTCTGCCGCAGCCTCCCGAGTAGCTGGAACTACAGGCACGCGCCACCACGCCCGGCTAATTTTTGTATTTGTTTTTTTTAGTAGAGACGGGGTTTCACCATACTGGCCAGTCTGGTCGCGAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACCGGCGTGAGCCACTGCACCCAGCCTTTGGCTTTTTGTATGTTAGTGATTGACCGAAAGCTTCAGGATGGGGGCTGGTCATCAGAAAGACCAAGGCAGGATTAGAGGGTTGAGACTTTGAGCCCCTACCCTCCCACCCCTGGGGAGTGGAGGGGACTGAGGATTAAGTTGATGGCAAGTAGCCAGTGGTTTAATCAATCATGCCTATGTAATGAAGCCTCCTTACAAACCCAAAAGGGGTGGATTCAGAGAGCTTCCAGAGAGCTGAACACATGGTGGTTCCTGGAGGGTCGTGCCTAGGGAGGGCATGGAGGCTCTGTGCCCCTTGCCCCATACCTCGCCCTAGGCATCTCTTCATCTGTATCCTTTGGAATATCCTTATAATCAGCCAGTAAATGTGTTTCCCTGAGGTCTGTGAGCCATTTTATTTTAGCAAATTAATCGAACCCAAAGAGGGGGTCGTAGGAATCCCAAATTGAACCCGTCAGTCAGAAGTTGTAGAGGCTGGGACTTGTGACTGGTGTCTGAAAGGGGACCAGTTTTGGGGGCTGAGCCCTTAGCCTGTGGGATGACAGTATCTCATGGTAGATAGTGTCAGAATCGAATTGGTGGACACCCAGCTGGTGTCTGCTGCAGAACTGATTCCTTGCTTGCTGATGGGGAGAAATCTCCTTGGATTTTGAGGCCACAGAAGTCTTCTGGTTTGATTGTTGTGGTTTTGTTGTGAAGCAGAGGAAGAACATAGTTTGAGTTTTTTCCAAATGGGTTCACATTGGGGGTTCTCAACCTCGAATCCATCAACTCCATCGCTGAATTTTTATTTATTTATTTATTTTTATTTTTGAGGTAGGGTCTCACTCTGTCTCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCATTGCAGCCTTGATTTCCTGTGCTCAAGTGATCCTCCTACCTCAGCCTACCAAGTAAGCTGAAACCAGAGGCACACACCAGCACTCTGGCATAATTACAAATAATTTTCACTAGGAAAGACTCACTAGGTTGCCTAGGCTGGTCTTGAACTCCTGAGTTCAAGTGATCCTCCTACCTCTGCCTCCAAAGTGCTAGGATTACAGGCCTGAGCTGCCTCACCTATCACTGATTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTGAGACAGTCTTACTCTGCCTTGCCCAGGCTGGACTGCAGTGGCACAATCTCAGCTCACTGCAGCCTCCGCCTGCCGGGTTCAAGTGAGTCTTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCAACCACACCCAACCAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCATGAACTCCTGATCTCAAGTGATTCACCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCGGCCTTTTTTTTTTTTTTTTAAAGACAGGGTCTCACTCTGTTACCCAGACTGGAGTGCAGTGGCAGGATCATGGCATACTGCAGCCTTGACCTCCAGGGCTGAAGGGATCCTCCCACTTCAGCCTCCCAAGGAGCTGGGTTACAGGCATATGGCACCATGCTGGGCTAATATTTGTATTGTTTGCACAGACAGGGTTTTGCCATGTTGCCCAGTCTGGTCTCGAACTCCTGAGCTCCAGCAATCTTCCAACCTGAGCCTCCCAAAGTGCTGGGATTACAGGGAAGAGCCACCACACCTGGCCTATCACTGCATTTTTAAAGGGAAGGAGGACTATAGTGAGATTCACTAAGGATGACAGAAAAGGTAGAACCCTAGATAGATTTAAAGACAGAGATTACAATATACTTGAGATGAAAATATCCAAATTTAGCTTTCATAGATAGGGAAATTTGAAGTACATCAGACTATAAGGTGGCATTTTGTACAACTAATTAAAACTATGTTTGAAAGAGAGCAATTGCATTTTCATTATTATGAGTAATATTAAGCAACAATGAAAATAAATAGAAATACTTGAGAAATTGTTATATTTAAATCTTCCCTCCTTTTTTGGAAAGAGAAGTATTGATATTTTTAAAGATTCTAATCAAAATTTCTCTTTTAAAAAAATTGATGATTTTATGGAGATAGGGAGGGAATAACCTACGTTTATTGAACACCTAATATTCCACTTACCTGAATGTCATTTACTCTATATTATAGTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTAGAGTGCAGTGGGGTGGTCACAGTTCACAGATGTACACCACCATGCCTGGCTTATTATTTTATTTTATTTTATTTTTGCAGAGACGGGGGTCTCCCTATATTTCCCAGGCTTGACTTGAACTTCTGGGCTCAAGCCATCCTCCTGCCTTGGCATCCCAAAGTGCTGGGATTATAGGCGTAAGCCACTGTGCTCAGCCACTATTATAGTCTTGATAGCAGAAGTGTCTCAGTGTACTGGAAAACTGTCTAAATTTTGAAAAACTATTTAAAAACACGTTGGTGTTATTTGGCCAACATGGATTTCTTTGCTCCATCATTATTTATTGGCATTATTAGCCTGTTGACTTTCAATTTCCTTAAATCCCTTTCACTCCATTTTTGTTTTTTTGGAGTTCTTTTTTTTTTCCCCCAAATAAAAGTTCTTTTTTATTTTCTTTTTTCTTTTTGAGACAGATTCTCGCTCTTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAATCTTCACCTTTCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCCTAGATTACAGGCATGCGCCACCTCAGCCTGCTAATTTTTTGTATTCTTTTTTTTTTGAGATAGAGTTTCACTCGTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGAGCCACCAAACCCGGCTAATTTTTGTATTTTTACTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTCATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGGCATGAGCCACTGTGCCCGACTTTTTTGTATTTTTATATTTATTTATTTATTTATATTTTGATACTGAGTCTCGCTCTGTTGCCCAGGCTGCAGTGCAGTGCCACGGTCTTGGCTCACTGTAACCTCTGCCTCCCATGCTTAAGCGATTCTCCTGCCTCTGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCTGGCTACTTTTTGTATTTTAATTTGAGACAGGGTTTCACCATGTTGGCCATGCTGGTCTCGAACTCCTGACCTCTGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACTGCGCCTGGCCTTTTTCGTATTTTAAGTAGAGACCAGGTTTCACTATGTTGGTCAGGCTAGTCTCGAACTCCTGACCTCAAATGATCTACCCGTCTTGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACCACACATGGCCAAAATACTTATATTTTGAAGGACACAGTTCCCCAATTTTTTCCTGTTTGTGTTCATTTTAAGGAATGGTTGACCACATTCAAATAGATTAGCGTTTAGAAATAAGAAAAGAAACCATAAAGAAAAAGGTAGGCTTCAGTAAAATGCACATAAATTAAAATTTCTATACAGCCCCCTTCCTTAAAGGAATTTAAATGTGGACAGATCGGAGGGGAAAGGTTTGCAGCAAAAATCATAAGTAGAAGGAAACAGAATGGTTAAGTACACAGTGTAGTAGCCATTTAGGAAAGTTATAAGCCATTTAAATGCCATGTATAAAGTGTTTTTGATAAGAAAAAATCAAAGTGTAAAGGAGAATACAAAATTATATGTGTACTGCGGTCACATCTGTATTGTTCTGTGTATGGAAAACAGACTGGGGAGAAATAGCTTTAAGTCCTAATAGTAATTTTCATTTTCTCTCTTCTTTTTTCTGCTTTCTCTTTTCCCTGTCTCCCTCAATATTGCATATCTTTCCCATTAAAAAGTATTGTATTATATATCTACCAACAAGACATTTGTTTCAGATTTTTTGGTTTTGTCTTCAAGGAACATTCTTCTGCATACAACTTCATACTTTTAAAATTCTCTGGCCTGGCTCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGTTGGGTGGATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCGGTCTCTACCAAAAATACCAAAAAAAATAGCCAGGTGTGGTGGTGTGTGCCTGTATTCCTAGCTACTTTGATGGCTGAGGCACAAGAGTCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGTGATCACCTCACTGCACGCTAGCCTGGGCAACAGATTGAGACTTGTCTCAAAAAATAAAAATAAAAAATTATTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCCGATCACCTGAGGTCAGGAGTTTGATACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACCAAATTAGCCAGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAATCCAGGAGGAGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAAGAGTAAAACTCCATCTCAAAAAAAAAAAAAAAAAAATCTTTACTTTGGATAAGTACTTAGAAATGGAATTTCCAGGTCAGCCACTAGATATTATTAATGGATTTAATACGAAAAACATTTACTTGAGGAAATATAAAGCTTTAAAAGACAGGGTCCCTATTCTTTAGTTATAAATAAAGCAGCATTTGTAAGGTAATATTCAGAAAACATCAGATAATATCATATAAAGTCCTCCTGTTCATGCTGATGACATTGGATGGCCAGTTAAGGATGACACTTCATTCTGTCCCCTGCAACCACGGTCCTGTCATGTCTAAATGATACTGACCCTATGAGAATGCTGTGGATGTGAAAGCATTTCTTCAAGTTAGCTTTTTGGCCTGCTGGTTTTAATCTAATGATGGGATATCCAAAGTGAAACTAATGGAGTGAAATGATTGTGCATCTGTTGGGAATCAGAGACAGCTAGAGCAAGGGCAGACATGTGCTGAACTCATCTCTCCTAAGAGCCAAAGCAAGCAGCAATGTTGCTAGCAGGGCTACTGCACATCTGTACACGTGGCTCCAATGGTTCTGACTTGTTTTTTTCCTAGTATGACCCTAATACAGGGGGCAAGTTAGAAAATCAGAGTTGCCCGGGCATGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGCCAAGGTGGGTGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTCAGCAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGTTCGGCATGGTGGCAGGCGCCTGTAATCCCAGCTAAAGGAGGCTGAGGTTGCAGTGAGCTGAGATCAGGCACTTCAGCCTGGGCGACAGAGCGAGACTGCTTCAAAAAAAAAAAAAAAAAAAAAGGGAAAGGAAAGAAAAGAAAATCACAGCTTGTTAGCCACTTGCAGCTAAAGCAACAACACACATGCACAAAAATTATTCAGTAAAAACAAAACAGTTTTGGCGTATCTTGAGATTTTGTTTTATATCCAAAGGAAGACTATCTTTGAATTACTCTTTGGAAAATGCCTTCTATGTAACAAATGTTGTAGTTTTCTTCTAATTGGGTCTTGAGGTCTCTCAGGAGAATGGCTATAATAAACTCTAGCCTCACCCTAATGGGGCTCTAGGGGAGGGGCTTGTGGGTCTTTACAGTAGCCTTTCACCAGACATTTATTTTTCCTGGCCCACAGCCTAATGCTCAAGTGTCTGACCCATGACCAGGTGTCTCACAGGAAACTTGCTTATACTGGCAGATGCCCCTGTAACTTTTGTCTGACCTGTGTGCAGTTTATTCATACCATGATACTCACTTTTGTATTTTATTTTACTTTATTTTATTTTTTGAGACGGAGTCTTGATCCTTCACAGGCTGGAATGCAGTGGCATGACCTTGGCTCACTGCAACCTCCACCTTCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGCGTGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCGGGATGGTCTCTATCTCTTGACCTCGTGATCCGCCCGACTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCATCACACCTGGCCTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACAGGATCTTGCTCTGGTGCCTAGGCTGGAGTGCAGTGGCAGGATCACAGCTCACTGCATCCTCGACCTCCCGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGTCCCACCACATCTGGCTAATTTGTATATGATATATATTTTTGTAGAGATGGGGTTTTGCCACATTGCCCAGAATTGGTCTTGAACTCCTGAGCTCAAGCAATTCATCTGCCTTGGCCTCCCAAAGTGCTGTGATTACAGGTGTGGGTTACCACACCCAGCCAATGTACATTTAATTATCGAAGTGCTATCTATACTATTTTATGGAAGTACTAATTAGTGAAGTGCATTAGAGGTTTTTTTTTGTTGTTGTTGTGTTTGTTTTGAGACAGAGTTTCGCTCTTATTGCCCAGTCTGGAGTGCAGTGGTGCGATCTTGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACCCCCAGCTAATTTTGTATTTTTAGTAGAGACTAAAATGGTCTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCATCCGCCTTGGCCTCCCAAAATGTTGGGATTATAGGTGTGAGCCACCGCGCCCAGCCAATAGAGGTTTTTAAACTTTTTGTAGATATTTTTGAAAGATCCTGTCTTCCTTTAAGAAATGAGGAAAGGCTGGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAGGTAGATTGCTTGAGCCCAGGAGTTTGAGAGCAGCCTGACCAAATGGCAAAACCTCGTTTCTACTAAAAATACAAAAAATTAGCTGGACATGGTGGTGCACGCCTATAGTCACAGCTAACACAAAGGCTGAGGTGAGAGGATCACCTGAGCCTGGGAGGTTGAGGCTGCAGTGAGCTGTGATCATGCCACTGCACTCCAGCCTGGGCAACAGAACGAGACCCTGTCTCAAAACGAAAACAAAAACAAAAAAATGAAACAAGAGGAAAAAAAAAAACAAGAAAGAAAGTGGTAAGGGAGGAGTGCCTGTTTATTAAGCTTTTGTTGTAAATAGTAATTTGCATATCAGATGTTTACTGTAATATTCTTTCAGCTTTGCTAGGCCTACAGCTTGCTGTGTGCTTTTGTACTCTAGTTCATTTATTTGGGAAATAATATATCAATGTGTTTTATTCATTCCCAG
Seq C2 exon
CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267041:ENST00000591344:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains