HsaEX6094717 @ hg38
Exon Skipping
Gene
ENSG00000267041 | ZNF850
Description
zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
Coordinates
chr19:36762305-36772825:-
Coord C1 exon
chr19:36772725-36772825
Coord A exon
chr19:36762595-36762675
Coord C2 exon
chr19:36762305-36762431
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTATTCATTCCCAGCTC
3' ss Score
8.19
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGGCGGGACCGTTTGCTGTGCCGATTTAGCTGCCGCCGCGCCTTGGAGTCCTGAGGAACTTGGCTAGGCTGGCCCCGAGCGGAACCAGAGAATGCTGAGG
Seq A exon
CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG
Seq C2 exon
GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267041-'0-1,'0-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTGAGGAACTTGGCT
R:
TGAGACCAGGCTGCTGTAGTT
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains