HsaINT1047706 @ hg38
Intron Retention
Gene
ENSG00000267041 | ZNF850
Description
zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
Coordinates
chr19:36762305-36762675:-
Coord C1 exon
chr19:36762595-36762675
Coord A exon
chr19:36762432-36762594
Coord C2 exon
chr19:36762305-36762431
Length
163 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
GCATGGGTTTGTCATTTCAGGGG
3' ss Score
6.19
Exon sequences
Seq C1 exon
CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG
Seq A exon
GTACTTTGTTGAAGTTACACTAATTTTTTTACTCTTCCCCACTCTCATCCTAGCTGGTCTGCTCACTGTATTCTCTCCATCCTTCAGCACCCTTCCATCTCTTCCTTCATCTTAAAAACCTTTCCTTTAATTTCAACAGCGCTGCATGGGTTTGTCATTTCAG
Seq C2 exon
GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267041:ENST00000591344:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGAATATTCGGAATGTCCC
R:
CTAGTGAGACCAGGCTGCTGT
Band lengths:
203-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains