HsaEX0001161 @ hg38
Exon Skipping
Gene
ENSG00000267041 | ZNF850
Description
zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
Coordinates
chr19:36761643-36762675:-
Coord C1 exon
chr19:36762595-36762675
Coord A exon
chr19:36762305-36762431
Coord C2 exon
chr19:36761643-36761738
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGGGTTTGTCATTTCAGGGG
3' ss Score
6.19
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG
Seq A exon
GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG
Seq C2 exon
GTCTCTCTATCCCAAAGCCTGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGATGGTTTCAAGGGACGTGCTGGGAGGATGGTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267041-'4-2,'4-1,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGAATATTCGGAATGTCCC
R:
TCGGCACCATCCTCCCAG
Band lengths:
171-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development