HsaEX0001161 @ hg19
Exon Skipping
Gene
ENSG00000196761 | AC020928.2
Description
NA
Coordinates
chr19:37252545-37253577:-
Coord C1 exon
chr19:37253497-37253577
Coord A exon
chr19:37253207-37253333
Coord C2 exon
chr19:37252545-37252640
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGGGTTTGTCATTTCAGGGG
3' ss Score
6.19
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG
Seq A exon
GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG
Seq C2 exon
GTCTCTCTATCCCAAAGCCTGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGATGGTTTCAAGGGACGTGCTGGGAGGATGGTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196761-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGAATATTCGGAATGTCCC
R:
TCGGCACCATCCTCCCAG
Band lengths:
171-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)