HsaALTA1062196-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000267041 | ZNF850
Description
zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
Coordinates
chr19:36748951-36762431:-
Coord C1 exon
chr19:36762305-36762431
Coord A exon
chr19:36750578-36750804
Coord C2 exon
chr19:36748951-36750577
Length
227 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GCTTTCTGGTTATTTTTCAGACT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG
Seq A exon
ACTCGGAGTTTAGATGTAAGACCAAAGATTCATGTTTGCCAAAAGAAATCTATGAAGTAACATCATCTCAGTGGGTGAGAATGGAAAAATGTCATAGCCTTGTGGGCTCCAGTGTCAGAGATGACTGGGAATGCAAAGGCCAGTTTCAGCACCAAGATATAAATCAGGAGCGATATTTGGAAAAAGCAATAATGACTTATGAAACAACACCAACTTTCTGCCTACAG
Seq C2 exon
ACATCTCTCACTCTGCATCATCGGATTCATCCTGGAGAGAAACTGTATAAATCCACAGAATGTATGGCTTTTAAGTATGGCTCAGAACTTACACAACAGCAAGAAACCCATACTGGTGAAAAACTCTATAAATGTAAGGAGTGTGGGAAGGCCTTTCATCACTTTTCCTATCTTGTTAAACATCAGAGAATTCATACTGGGGAAAAGCCCTGTGCATGTAAAGAATATGGAAAAGCTTTTATTTCTGGCTCACATCTTATTCAACACCAGAAAATGTATACAGATGAGAGACCTCATGAGTGTCAGGAATCCGTGAAGGCCTTTAGACCGTCTGCACATCTTATTCAACATTGGAGAATTCATACTGGTGACAAACCTTATGAATGTAAAGAATGTGGGAAATCTTTTACTTCTGGCTCAACACTAAATCAACATCAGCAAATTCACACTGGTGAGAAACCCTATCATTGTAAGCAATGTGGAAAATCTTTTACTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267041-5-5,5-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGGTCATGTTCCAGGAT
R:
AAAGTGATGAAAGGCCTTCCCA
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains