HsaINT0188816 @ hg19
Intron Retention
Gene
ENSG00000121903 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:13093]
Coordinates
chr1:33954715-33955202:+
Coord C1 exon
chr1:33954715-33954791
Coord A exon
chr1:33954792-33955117
Coord C2 exon
chr1:33955118-33955202
Length
326 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTGTCTTGTGCATCTCGCAGGAA
3' ss Score
8.48
Exon sequences
Seq C1 exon
CTGTCCTCACTCCCCGAGTCCCTACTCTCCCAAAGATGGGGAGCGTTGGAGATTGGGAGGTGACAGCTGAGTCCCAG
Seq A exon
GTAAGCTGTTACTCGTTCTTCCTTTCCTGTCATTGCTGCTCCTGTGCTCTTGCCCCCACAGTGTTCCTCCTCTCTCTCCATGACCTCTGCTCAGCAAAAGGGCATGAGGCCCAGGGTGTTAGCCTTTGCCCTTCACCCCCAGCCTGCTGGGCCCCAAACATCCCCAAACACATGTATGTACCAAATGGCCATCCTGCTCCTTATGATGCCAGCTTCACACATGGTATCCCTCTGTTCCCATCATCTTTCCTGGGAGCCTGCTAGGGTTCCTAGGCTGTTGTCAAAGGTCAGTGATGTTTGGGGTCCTTGTCTTGTGCATCTCGCAG
Seq C2 exon
GAAGCCCTGGGCCCTGGCAAACATGCTGAGAAGGAGCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACAGCGTGTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121903-ZSCAN20:NM_145238:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)