BtaINT0166399 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112938763-112939199:-
Coord C1 exon
chr3:112939123-112939199
Coord A exon
chr3:112938848-112939122
Coord C2 exon
chr3:112938763-112938847
Length
275 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTCTGTTGTATGTTCCACAGGAA
3' ss Score
9.86
Exon sequences
Seq C1 exon
CTGTCCTCACTCCCCGAGTCCCTGCTCTCCCAAAGACGGGGAGCGTCGGAGATTGGGAGGTGACCGCGGAGTCTCAG
Seq A exon
GTAAGCTACCGTTTGCTCCTCCTTTCCCGTCGTGACTTCTCCTGTGCCCTGACCTCAGCTCCTCTCCTTTCTTTGTGGCCCCCGTCGGGTGCAGGGTGCTAGTTCTCCACCCTTCCTGCCCTGTGTACTGGGCCTCTCCTGGGGCGAGCTGAGGCTGCTGACTGGCCTCACACAGGCTATTGCTGTGTCCATTATCCTTCCTGGGGCCTGGCGGGATTCCCAGGCTGTTTTCAAAGGTCAGTGACATTTGAGGTCCTCTGTTGTATGTTCCACAG
Seq C2 exon
GAAGCCCTGGGTCCCGACAGACACGCTGAGAAGGAATTCTGCACGGACCCCCCAGGAGACAACTGTGGGAACGGCTTGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555:ENSBTAT00000026057:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTCACTCCCCGAGTC
R:
GACAAGCCGTTCCCACAGTTG
Band lengths:
157-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]