HsaINT1002667 @ hg38
Intron Retention
Gene
ENSG00000215009 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr12:7306533-7310746:+
Coord C1 exon
chr12:7306533-7306743
Coord A exon
chr12:7306744-7310538
Coord C2 exon
chr12:7310539-7310746
Length
3795 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GGGCCCTCTGTCCTTCCCAGGGA
3' ss Score
8.48
Exon sequences
Seq C1 exon
ACAGGGGAGAGACCAGCTAACCCAGCCCTGTGGTGGGTGAATGGCAAAGGGGATGAGGTAAAATGGAGCTTCAGAGAACTGGGCTCCTTGTCCCGAAAAGCTGCCAACGTGCTCACCAAGCCCTGTGGCCTGCAGAGAGGAGACCGTTTGGCCGTGATTCTGCCCAGAATCCCTGAGTGGTGGCTGGTCAATGTAGCTTGCATACGAACAG
Seq A exon
GTCAGTGCCAATATTAGCATTCTAAATCACACAAACACAGAGAGACTGAAACTCAATGGTTTTCTGAATTGTTAGCTCTGATTAAAAGTATGCATACAGAAGACAAAAAAAAAAAAAAAAAGAAGAGTTAAGGCAATCATGATATAATAATAACAATAACACCAAGAGGGAGGTATTAGTGTGATAACCATTTTGCAGAAGAGGAAACCAAGGCTCAGGTTAAGAAGCTTGCCGGGCGTGGTGGCTCACGCCTGTAAGCCCAGTACTTTGGGAGAACGAAGCAGGTGGATCACGAAGTCAGGAGTTCCAGACCAGTCTGGCCAACATACTGAAACCCCGTCTCTACTAAAAACACAAAAAATTACCCAGTTGTGGTGGTGTGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCGTGAACCCGGGAGGTGGAGGTTTCAGTGAGCTGAGATCTTGCCATTGCACTCCAGCCTGGGCAACAGTGCAGGACTCTGTCTCAAAAACAAACAAACAAACAAAAGCTTGCCAAAAATCACAATTAGAAAGCTATTCTATTCAGTCACAGCTAGAAAGCTATGCAATTGGGATTTAAAAACAAAGCTCTATAAAAGCAAATTTGGGTACCAACATCTCTTTGCAGTGCTAGATTATCTAGGACATGTTCATCCAGATGATCCAGATAACTTCTCTGAATATATTTGGATTCTCCCTAACAAAAAAAAGATACAACAAGAAGAAAAAGTATTTATACATCAGGACTTATAAGAATATGATTGGCACATCCCAGTTGAAAAATCTCTACCTTTATTTCAGACTAACTAGTATATTCAATGACACACTTTCTCCCCAAGTAGTAATTTATAATTTACCCCAAATAAAAATTCCAACAGGATTTTGTTCCACTCTAGGACAGGAGTTAGCAAGCCATGGTCTGTTGGTTGGGCATCTATTTACATAAGTAATTTTAATGGAATACAGCCATGCTCATTTATTTATACACCGTCTATGGCTCCCTTTGTTTCACAACAGCAGAAATCCTCATTGAGATGGAGATACTATGGCCTGCAAAGCCTAAAATATTTGCTATCTGGGCCTTTATTGAAAAGTTTTCCAATTCCTGCTCTAAAACATGGCATAAATGTTTATAAGTCAATTAAGAATAAATAATATCAAAGGATAGAATATGGTAAAAATCACGAAGATGTTTGTTGCAATGTTATTAATAGTAATAGAAATTTGGAAACAACTAAATAGAAATGACTGAATTATAATAGGTGAGACTAAGCTTAGTTGAGGTGTGTGTGTATAAGTGATTAAAATTATGGTAATTCAACTTGAAATACCACTAAAATGATAATTACAAGGATTTCATAATGCTGTTGAAGATGATCTTTCTGCCAATATTGAATAAAAACAGCATTATATAAAATTCGTTTATATAAAATTCTTTTTGCATTCACTAAAAACAACTTGCAAATGTTAAACCAGTTGTGGATTGAGAGTAGATTAAAGGTGATTTGTTATAAAAAATATGTAATATTGCTTAACATGTTATGAAATGTATAAAATAATAGTGAAAACTGGACAAGCTGAAAGGCTAACATAAAACACTAAATTAAATGTAAAGCAAGGAGGTGAGATTATATTTTCTAACTCAGAATTATTAAATCTTCAATGAGAATATTGAAATTGTTTGTACTATATCACATAGCAAAATATTTTGTTTTCTTGCTGTAAAGTGTATGCAGTAAAGCCTGAGATATATGCTATCTGAAATCCACTAGAAGAAAACTTCTCCTAACCCTGAATTTAGAGGTCTACCCATTGAGTACATTCATATCACCAATCTACCAAGGGAGCTAATTATTTGTAAGTCATTAAGAACAAGTGGTTTGTAAAATAAATAATCTTAAATTTTTATATTGAGCGAATACTCTAAGATGTTTTCTTAATCAACTTCCTTATCCTTATGCATTTATTCACTTTCTCAAGAAGGGATGATATTTAAAAGCTTTTAAAATATATTCATAAAATAAAATCTCCTTCCTAGCAATTCAACTCCACATTTTTGTATTTAGCAAACTTCAGGGAACTCACCAAGAAATGAGTAGTTTGGCTTATAGCACAGGTCTTGGAAGTGTGGGAAATGTATCTTTGAATCTTTTCTATCCTTTGCCACTTATTGACTTTGTGACCCTTGGGCAAGTTATTATTTATATACTGGGATTAATTTTAAGTGAGATACCAGGCACGTAATAAGTGCTCAATAAACAGTAGTGATTATCTGTATCACTTTATATACACTTCACTTCTTGTTCCCAATAATTCACTTTAGAAAGTACAAACTTCTCTCTTTAATCTAATTCGGCCATGTATGTTCTTCCCAGAATGAACTGGTACTTTAAAATCAGACATCTCCAGCCAGTGTTTAGGATGAAATGAGGAGGTGAGATAAACTAAGCATTGCCAAAGTAGTCTAGGCAAACCTTGATGATGCCAGACCACTGGAATCCATAGAGAAGAGGGCTGGCTCTGCCACTCACCAGCTCTGACCAAATCTCACATTCCGTCAATGGGCACAACCACATGGACCTACCAGGGTTGCTTAAAACAGTAGTCTCTAGGCATTTTTGACTGTATAATCTATCAATAAAAATATTTAGGATACACATCTTCCCATCTGGGTATAGCTACTTATGTGCTTCTACTGCACTAATACAGTATGCATATTATGAAACATACAAAAATGAGATAAAAGCATTAAAAGAATTGTAGTTTCTCAATAATTTCTAGTTCTTTAAAATTTTTAATATTATTTTAAAAATTAAACAGGGACGGAATCTCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGACCCTCCTGCCTTGGCCACCGAATGCACTGGGATTACAGGTGTGAGCCACCATGCCCAACCAATAATTTTTCGAATTTCTATTTTCATTTCTTAGTCCCAATGGATTGTTGAAAAACTCACTTTGGAGGCCACTGGTTTTTTTCTCTTGTTTGTTTGTTTGAGACAGAGTCTCACTCTGTCACCAAGGCTAGAATACAGTGGTATGATCTTGGCTCACTGCAGCTTCCATCTCCAGGGTTCAAGTGATTCTCCTGCCTAGGCCTCCTGAGTAGCTGGGACTATAGGCGTGCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTACAGACAGGGTTTCGCCATGTTGCTCGGGGTGGTCTCGAACTCCTGGGCTTGATTAAGTAATCTACTGGCCTCGCCTCCCAAAGTGCTGGGATTACAGGCCCAAGCCACCGCGCCTGGCAGGAGACCATTGGTTTAGAGAATTGAATGAGACAGTGCTCATGAAATGTGTTATAAGCTGTAAAGTGCTATTTAAGTAGTACACAATAATGATTCAAACGTGACATTAAAATGTTACATAGTAATGGCCCACCATTATAATGTCTGCTCAGACACTTACTGTTGTTATTCCCATTTTACAGATAAGGAAAGAAAGGCACAGAGAGATCAAGGTCATAAAGCTTGTAAATTGCAAGGGCAGGATTAGACCCATGGTCTGTCAAACTCTGAAGCTAGTGCTCCAAGGGATCTCTCAGGGATCAGGGTCCTGTGCAATATCCTTGGGCATCAAGGCAGAGGTAGCTGAGGTAGCTGAAGAATGGATTGTGATGCTTCTCCTCACCGAGGCACAAAGCCCAAGTCTTCCACAATGGACAGCAGTTCTGTTCAGTGCAGGGCCCTCTGTCCTTCCCAG
Seq C2 exon
GGATCATCTTCATGCCGGGAACAATCCAGCTGACAGCAAAAGACATCCTCTACCGGCTGCGAGCATCCAAGGCCAAGTGCATTGTGGCCAGTGAGGAGGTGGCCCCAGCGGTGGAGTCCATTGTATTGGAGTGTCCTGACCTTAAGACAAAACTCCTGGTGTCTCCACAAAGCTGGAATGGGTGGCTCAGCTTCCAGGAGTTATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215009:ENST00000399422:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains