MmuINT0010276 @ mm10
Intron Retention
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:119694609-119698761:+
Coord C1 exon
chr7:119694609-119694819
Coord A exon
chr7:119694820-119698553
Coord C2 exon
chr7:119698554-119698761
Length
3734 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGAATCACTTTTTGTTCCAGGGC
3' ss Score
7.08
Exon sequences
Seq C1 exon
TCTGGAGAGAGGCCAGCCAACCCAGCCCTGTGGTGGGTGAATGGGAAAGGAGATGAGGTGAAGTGGAGCTTCCAAGAACTGGGTTCCTTGTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGTGATTCTGCCCCGTATCCCTGAATGGTGGCTCATCAATGTGGCTTGCATGAGAACAG
Seq A exon
GTGAGTATCACAAATGAGTGTCAAAACTTGAGACTTTTGTGAAGGGTCAGCTTTGACTAAAGCAATCCTTACAAAAAGTAGAGAAAGAAAGTTAACCTTAATAGCAGTTGTGATGAAATAATAACAACAAACTTAAGAAATTGGGAACACTGTGATAACCATTTTTTGAGAGAGGAAATCAAAGCACAGTGATATTAAGACATTTGCCAAAGGTCACATCACTTGAAAATTATGTAATTGGGGACCTGGGAAGATGACTCAGTGGATAAAGTACTTGCTGTACAAACATGTGGCCCTGCATTCCCACATCAAAAGCTTGGCATGGAGGGACAGGTTTCTATGATCCCAGCACTGTGGGCGCAGAGACAGGCACATCCCCTGGTCTCACTGGCCAGCCACACCTAGTCAAGACAGAAAGTCTCAGGTTCACACACATATACCCACACACACAAATAAAAATGAAAAAGAGAGTTGCACTATTCAGAGTTGCAGAAAAAAGCTCTATAAAGCAAATGCAAGTGTGAGTGTTTCTCCACAGCACAGGGTGTGTGGAATATCCCCCCCATACACACACACACACACACACACACACACACACACACACACACACGCGCGCACACACGCGCGCACACACACACACACGCACACACACGGTTCTCTCTTCTGGGTGTGTATCTAGATTCTCTGCAACACAAAAATACAGAAGAAGTGGAAGTCTTTGAGGATGCAAAGATTTGTAAGAACATAAGGGACTCTGGACCCAAGTTTGGAAAAAAAAAAAAAACTCCAGTCAGAAGAACTAATGTATCCAGTTACACATTTTCCCCAAAGTAGTAACATGTAAAGTAAAGACATGTCTTTCAGATAGGGGTCTGTGAGCCATGAACTATGGTTCCTCTGCTTGGGTAAATAGACGTGTGATGGAATACAGCTGACTCCTTTTGCTCCACAGCAAACGTGCTGACTGAGACCAAGAACAATCCTACAGGCCACAGAGTCTAACACACTCTCCAGGCCTTTTACCAAAAGACTCTCTGATTTCTTATCTTTAAAAAAAAAAAATCATGCCGGGCATGGTGGCACATGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGTCAGACTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGCCTCGAAAAACCAACAAAAAATTAAAAAATAAAAAAAATCATCAGACATCCATTAAAATAAATAAGAATGCCAAAGTGTAGACTACTACAGAGAACAGAAAGATATCTGTGCAATGTTATTAGCAGGTATACAAAACCAAACTTAAATAGAAATGATTAAACAATGCATAACCTAGCTAAGGTGTAAGTTTAGTTGAGTTGTTGATTGATGGTTGAATGGCTTGATCTTGATTAAAAAATAATTTATACTAGCAATAATAACATCAGGAGAATTTCAGAGAATTTAAGATGCTTTTAATGCCAATAAAATACATGAAAGCAGGAGTATAAAAATGTTTAAATTCACCATATAAAAAGACAGAGATAAATTGGAAATCAGCCGTGGTTGGAAGAAGATTAAGGATGGTTTATCTGTTATGAAATATACCCTTAATGTAATTTAAAGTAAATTATTTAACTTAGGAAAATCTGTGAGTACAAACACACAAGCTAGTGTTCAAAAACATGAAATAAAACAATAACAACAGTTCATCAAGTGAAGAAAGCCAGCTGCAGACCTGCTTATTCCCCAAAATGTCAAACCCTTCATGTGAATTTTTAAAATTGCCTTCACTCACCACATAACAAACTATTTGATTTTGCTGGAAGGCATATGCAATAAAGTCTAAAATACTTGCCATCCAACAAACATTTGCTGTCTAAAACCCATTAGAAGAAATCTTCCTCTGACTCCCAAGGTGGTAATCTACTACTGAACACATTCATAAATCCACCACGGAGACTGTAACTGGGAATCATTAAGAGCAAATAACTTGTAAGAGAAATCATTTTATATTTTTATATTAATTGATCGTTCTGAGACTCTCTAACGTGTTTTCTTAAGGGAATAACTCAGCTAACTCAGTTAAAATATACTCAGTAAAATAGCCTTGGGATGGCAAGATGGCTCTGCAGGTAAAGGTGCTTGCTATGCAAGTCTGGCCACCAGAGCTTCTGAGTCCATGAGACCAACCTAAAGGTGGAAGGAGAGCGTTGATATTACAAAAGGTGTCCTCTGCCCATATGCGTACCACAGCATGAGAGCTCCCCACAATAACACTGATGACAGTAAAAAAAGAGCCTCCTTCCTAGGAATTCAACTCCACAACTTCCTCCTATTTAGCTGATTTCAGAATACCCAGCAAGGAGTACATACATAGACATACAACACAGGTCTTGGGAGTGATAGAAATGTCTCTGGGGACTAACCTTGCTATTGGCATTGCCATTTATTGGCTTTGTGACCCGTAGGTGCGTTATCATTCACTGGCATGTGATATGTGCTCTGTGCACGGCAGTGGCTATCTGTAATGTTTTGAGTATCACTGTCTTCCCATGGATTCACTTTAGAGAGTCAAACCACCTGCTTACATCTTATCCTTACATCTAATCCTTACACCATACATGTAATCCTGCCCTGTGCAGTCTTCTCATAAGGAGCTTTGAAATCCTGTCTCTGGCTGCTGTTTGGGATGAAGAGGGATAAATTAAGCATGACCATCGTCATCTAGGAAAATCTTGGCGGTACCAGACCACGGCATCAATGATTTGTAGGCTGGCTCTGCCACTCACCAGCTATCCCCAAAGACTGCATGCACCTCGTGGGGATGCTTAAAACAGTAGTTTCAGGTTACTAAGGTGGCTTGGTTACTAAAGATGCTTGCTGCACGAGCCTAGCTACATGAGTTAGATTCCTAGGACCCACAAAAAGGTACAAGGAAAGAACCACATCCACAATGGTATCATCTGACCTCCATGCAAACAACACACACACATACACACACACACACACACAAATGATAGATTAAAAAAAATCCTTTTAAGTTTTTGAAGAATAGTCTCTGAGCATCTGGGGCTATGCAATCTATCAAAAAAAATTAATGAGCAGGCATTTTCCTAGCTGCATATAATTTTTCACTCTGTCCTGTTGCACTGATGTAGTATGCATCTTACAAAGCATTTCAACAAAGAGAAGAATTCTAGTGTCTCTGTACCTTTTACATATCTATTATTTGCTTTTCTCATTCCCAGATAAATTTTGAAAGATTTATCTTGCAAAATCTTTCACCTTGGTTGAAAGGTTGAATGAGATAATGTTCACAGAACCGTGCCATAGAATGTAACATGATGATTAAATATCACACAATCATTACACAATCACCTTTCAAGCCTGACATGAAAGTGGTTCTTACTACTCAGCCCATCATTGTCAACCAGCTGCTGTCATTATCCCCATGATAAAAGTAAAGAAGGGAAGGCCAGAGAAACCCAAGTCATAGGGCTAGCAAGTTGCAAGACCAAGACTAGACCCAAGGCCTGTCAGATTCCAAAGCCAGAGCTCTACTGATCCCTCATGCCAGGGCCCAGCAGGACAGCCCAGGGAACCAAGTTACAGGTAGCTGAGGGCTGACATCTGAAGTTCTCATTCATCCAGACACAAGACCTAGATTTCCCAATAATCTCCAGAGCTGTTAGCTCAGGAATCACTTTTTGTTCCAG
Seq C2 exon
GGCTTGTATTCATGCCAGGAACGATCCAACTGACCAGAAAAGACATCCTCTACCGGCTGCAAGCATCCAAGGCCAAGTGCATTGTGGCTAGTGAGGAAGTGGCCCCCGCAGTGGACTCCATTGTATCAGAGTGTCCCAGCCTGAAGACTAAACTCCTGGTGTCTCCACACCACTGGGATGGATGGCTCAACTTTCAGGAGTTACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026:ENSMUST00000047045:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types