HsaINT1002677 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20437268-20439919:+
Coord C1 exon
chr16:20437268-20437367
Coord A exon
chr16:20437368-20439799
Coord C2 exon
chr16:20439800-20439919
Length
2432 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
GGTATTTTGTTTTCCTGCAGGTG
3' ss Score
10.68
Exon sequences
Seq C1 exon
CTACCGGATCGGGCCTGTTGAAGTGGAAAGTGCCCTGGCAGAGCATCCTGCTGTCCTGGAGTCGGCTGTGGTCAGCAGCCCAGACCCCATCAGGGGAGAG
Seq A exon
GTAACCAGTGCACCCAAGAACATGGCCTCCTGCTTCTGTACCTATTAGCACCCAGCAGAACAAGCAGGAAGGCTCAGATTGTCCTGTATTTCACCTCCATCCTTGTGCCACAAAGTTGAAATGCCACCATCAGACACACGTTGCCTTCATGTCTTTAGAGATACAATTACTCTCTAAAGGGACATAATGGGAAAACACCAACACTTTGCTTTTAAATGGACACAACTACATCCCAGAGAGGCTGGCTATGGGGCAGGAGATCTTGGGGGAGGTGCAGGCTCTGTTATCCATCCTGTCTAATAAAAAGTCTTTTCTATTTGCAGATGAGGACATAGCAAGCACACCAGTAATAGTTGCTGATGGCTGTAACCTAAGAGGGATAGAATATGTATCCAAAATGACCTACATATACCAGAAAGATGGGCCAAATTTAATAAGCTGGGCTTTCATAGGAGAAATCCTTTTTTTTTTTTGAGATGGAGTCTTGCTGTGTTGTCCAGGCTGAAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATCTTCCTGCCCCAGCACCCCCCCCAGTAGCTGGGATTACAGGCACATGTCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCTTGTTGGCCAGGCTGGAGGTCTTAAACTCCTGACCTTAGGTGATCCACCCACCCCGGCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACCGTGCCCGGCTAGGAGAAATCTTTCTGTGGGTCCCAGAGGAATGCATATTATGGGAAAGATCAGCTAACAGGCAGACTTAGGTACTTTTCACTGGCTTACATCCAACATAATCCTAAAGCACAACAGTTACCTTTTGAAAGTTAGTGCAACATTAGCCTGCATTCTCAGAAGCATCAAGACCACAGGAGAGATTCTCAAAGTCTGGTTCTTGGACTGCTTGCAACTGTATCATCTGAGATTCTTGTTTAAAATATAGATTTGTAGACCTAAAGTCAGACTTACCAAATCATGATTACTGGGAATGCAGCCCAGAGAATCTGCATTTTAGCCAGCCATTCTTGGCCAAGTGATTCCCCTCTAAAATCCAAAGCCATTAATGTATAATAAGGGAGGTGTGGAGTCCCATTGATGTGCTGAAGAAATCATACCTCAAACGTATGCCTAGTTCTGCATGCCGTGAGTTAACTGGGACTGTGACAAATGGCTGTGTGCTCAAACTTAATCCATGTATGGTGCTTAGAACTGAGTCTGGTGTGTAGAAAGTGCCCAACACATAAGCCGGACACGGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGATCATCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAAATACTAAAAATTAGCCAGGCGTGGCGGTGGGCGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCACCTCACTGAGCTCCAGCCTGGGCGACAGGGTGAGACTCTGTCTTAAAAAAAAAAAAAAAAAAAAAAAAGTGTCCAACAAATGTTTCGTAGTTACAGTAGTAAGAGTAAGAGGAAGCTCTTTCTAAAAGCATATCTGTCTGAACATGAAATGATAGTGGCCTTCCTCCCTGTGGGAAGTATGCAAGGACAGTGAGCTACCCCTTTAATAGAATACTGTTAACAGATAGGAATGCTGGAATTAATAAGCATCCAAGTGACCTTCCATTCCTAACAGAAACTATGTTTGTTGTGCTTGAGTCTGGGACACTTCCTCCTGCCTGGCATAAGACAGCCTGCAGGAAAGTTGTGGGCAGAGAGACCCAAGATGCAGAATGTCCCTCGGGATGTCTGGAACAGAAGTGGTGCAGTTCAGGGTCTGCTGATTGCAAATGTTCATCCACGCAGACCCCCAAAGACCTAGTTCCCCTTGCAAGTGCCTGCATTTTCCTCAATCCCACCTGTTCAAACTCATGCCTACCTACCTTTCTCATTAGGAAAATCTGGAAGAAAATGGCCCTAGGAGTTTATGAACCTCTTTTCTCCAAAATATTTGCTTCTTAAGAGAAGCGATGTTGGCTTCAAATGGTGTCATTCCAAGTATGGGGAGTAATTTGAGAAAGAGGTAGGAGTTTGAAATCATCCCAGAAAGGTCAATCCTCCTAATAGTCACACCTGGAAGGGCCAGCAAAAGAAAAATTGATGTTGTTTGTGTCATTGGCTGTGCCCAAAAAAAACTAGTAGAACTTTCATGGTGCAAAGGTAAATGTAGGCACTTATTCAAGCCTCACTTAAGGAGAAAAGAGTTGTTATACGAGGCCTGATCTTTTCTGGGTATTTTGTTTTCCTGCAG
Seq C2 exon
GTGGTAAAGGCATTTATAGTCCTTACTCCAGCCTACTCCTCTCATGACCCAGAGGCACTAACGCGGGAACTCCAGGAGCATGTGAAAAGGGTGACTGCTCCATACAAATACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains