BtaINT0013168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18653141-18655873:+
Coord C1 exon
chr25:18653141-18653240
Coord A exon
chr25:18653241-18655753
Coord C2 exon
chr25:18655754-18655873
Length
2513 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CATTCAAATATTTATTTTAGGTA
3' ss Score
8.46
Exon sequences
Seq C1 exon
TTACCGAATTGGTCCGTTTGAGGTAGAAAGTGCCCTTATTGAACATCCTGCAGTTGCAGAGTCAGCTGTTGTCAGCAGTCCAGATCCCATCAGAGGAGAG
Seq A exon
GTAACTGAGAGAGGTCTCTCCCTTAGTTTGTTGGCAGTCTAACACATACTTTTAAACAGTAGTTCATTGAAACAGAATTACCTAAATGATTCATTCACTAATTATGTAATTTAGAGACTCATTATTAAATATGCTAGTCAGATAGAAATATGCTAATTAGAATGAACTGCTACAGAATGAGACTGAAAATATACACTCTATAAAGAATTTGAATCCTCTCCATGGAGTACTGGGGCAAAGACAGTGTGAATGCCGACAACCCAGGTTCACACCAGAAGCGACCCCATGGGCTGTAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAATACTGCAGTGGGTTTGCTATTTCCTTCTCCAGGAGATCTTCCCCACACAGGGATCGAACCTGGGTCTCCCACATTGTAGACAGACGCTTTACCGTCTGAGCCACCAGGGAAGTCAGAAGCTAATTAGATAGGTTCAAGTTGTTACCCAGATCTGGAAACTAACATGGCCCCTAGTGTAGCTGAGGATAGGCTGGCATCAGATATCAGGACTAGGAACAAGGTCAGAAATAGGAACTAAGTAACCAGAAGCAAGCTGGGTTGGTCAGTAAGTAGAGGCTTCAGGAAATAATAAATAAGGCAGAAGTCCTGAAAGCTCACTTCTGTTGGGGTTGATCACATGGTAGTCTGGGTTTAAAGATTCCATGCCACTCTTCAGGTACTTTTTGCCAGGCATGGTCAATAATATTCCACATTCTAGTAATGCAAGTAGGGAAAAGATTTAGGGATTATTGAAGTTTGTCCCTTTGCTCTGAATGCCATCAGTAGGTGGAATGAGTCTCTCCCCTAACATCAGTCATCATTTCCTCCTCTGTAAAAGGATTCTGTGAGGGGAATTACACTCCATATTTTGTAATAAATCTATAAGGGAAAAGAATCTGAAAAAAACTATATCTTATCTATATCTGAATCACTTTGCTGTACACCTGAAACTAACAAAACAGTTAACCAACTATACTTCAACAAAAAAATTACAAAAAGAGAGAAGGATATAAAGTTGTAATGTACAGCAGGGTTCCAATTTTAAATATAAATGTCTTAGGAAAAATAGGAATAATTCACACCACTTTGCTGGTTTTCTCTGGAGAATAAAATTAAAAATGATCTTTATTTTTAAAAAAGTTTGTGAGGATTAAATAAGTTAATATAGGTATAGGGCTTATAACAATACTCAGAACATATTAACTCATTAAAAATATTAGGTATTAGTTGTAGTACTAGAAGTATAAGATTTTTTTAACCTAAAATCTGTAAGTGGGCTTCAAAGTTTCCCTGAAATTCTGTGCAAAAGAAATTACTACAACTGATACCTTATATTTTTAATGACTTAGTATGTATGTTCCAGGTATGGTTATAATTTACTTAATCCTCATAAACTCCTTTCACAGATAAGGAAACTGAGGCAGAGATGTGTCCTTACTTGCCTGAGATTATAGGCAAAGTGTGACTCAAATCCAGGTTGTATACTTCAGAGTTCATGCTTTTAACCATGTTAGATTTTTCTTTATTAATTTATCATTTTGCTGTAATGGTTTATAAAGAATTCTATAAAGATAAGTTAGATTTTATCCAAGGTGCATGAGTCATCAATATGCAAACCAGTAATTACAAACACTAGTTCTTAAAATAACTTGCCTTTGCACAATTCACTTATAGCAAGGATGCAATTTTTTAATTCATAAAAATGTTGATAAGCAATAGAACAAGCATAAATACAAATAAATTTTATGAAATGTCGAACAATGAATACAATAAAATTATATACATGCATAGACACACATACACAACTGCCTTGCATCAACAGAAGTGTCTATGAAATAAAGAGTGGACAGTCTCAGCGAACTGTTTCTTTTAACAAGGATATGGCAAACCCAGTGAGAAGACTGTTTATTAGGACCGTACTGAGTGTGATGACCTATAAGCTAGACTAGATCAGGATGGGTTGTTTTATAAAAGACTGTGCTTAGTGCACTACCAAGTTTCCAAAAGAAAATTTTTTGAAGGGGATAACAGATGAGGCAAGAAGTCAAGAGCAGAGATGATCAGAAACACATCAGAAAGTAGTTTAAGATGTAGTGAGATGAGACAGTTCAAGTATAGATCAAAATCAAAGTAGGGGTTCCAAAAGCTCTGTTGTATTAAGATCCCCTGGAGTAGGAAACGGCAATCTGCTCCAGTGTTCTTGTCTGGAAAATTCCATGGACAGAGGAGCCTGGCAGGCAACAGTCCATGGGGTCACAGAGTTGGAGACAACTGAGTAACTGAGCACACACGCACACATTAGATACAAAATCTAGGTGTGGGAGTCAACTGGCTGGCTTAAGAGCATAAAGCTGAGATCAGACTCTAATAAACATTTTGGCTCACCACATGATGTATTTATTTAGATTCTCAAGTTAAGAGAAAGATACATTGAAACATAAAAATATACAACTCATCATTCAAATATTTATTTTAG
Seq C2 exon
GTAGTAAAGGCTTTTATTGTTCTGAATCCTGATTACAAGTCACATGATCAAGAACAACTAAAAAAGGAGATTCAGGAGCATGTAAAAAGAAATACAGCACCTTACAAATATCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447:ENSBTAT00000008455:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]