RnoINT0012451 @ rn6
Intron Retention
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189534599-189540269:+
Coord C1 exon
chr1:189534599-189534698
Coord A exon
chr1:189534699-189540149
Coord C2 exon
chr1:189540150-189540269
Length
5451 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GTTTTACACATTTACTTTAGGTA
3' ss Score
8.03
Exon sequences
Seq C1 exon
TTACCGAATTGGACCATTTGAGGTAGAGAGTGCTCTCATAGAGCATCCTTCCATTGCAGAGTCAGCTGTTGTCAGCAGCCCTGACCCCATCAGAGGAGAG
Seq A exon
GTAAACAAAACAAAACAAAAATCTCAACGTTCATCTTCATTGACCTAAGAGCATACTTCAGTCCTGTGTGTTACATGCATGTATGTGGGTTTGATTTCCCTCTGTGGGCACAAGTGGATGTTGGGATACATTCCTCAGTCACTTCTTCACCCTATTCTTTCCAGACAAGGTCTCCCCCTGAAACTGGAGCTCAGTGTTTAGGCTGGATGCTGGGCCAGTAAGCCCTTGCTCCTCGTCTCCTCCCTCACTACTGAGGTGACTTGTACAATGCCTGGCTCCCCCCAGCCCCTGCTCCACGGGACTTGGGATATGAACTCAGGGTCTTATGCTTAAGCAGCAAGCACTGTTGCCTTCATAGCCCCTAAACACATATTTTAAAACAATATTTCACTTAATTACTCTACTTATTAATGTTGCCTTAAAATAAAGACTGGTCTCCTTCCAAGATTGCTTTTCCCAAGTGATCTTTGATGCCAGATGATAGCCCATTGTGTTCATGGATGACCCTGAGCGGTTTTAGCTCTTGAGCAGTGCTTATGTTTGCCCTATTTTACTATGAAAGGGAGACAGGTATATGAGAGGAGGGAGCAGATAGTTTTTAAAGCATCTCTTCACTACATCTCACTCACAGGGTCTTAGCTCTTCCCTCTCTTTGCTCTCTCTGTCAATTCTATCTGCCTAGGCAAACGTTTATTTGGAACAGGGTGAGTGTGGAGCCTTTAGGACCAGGGTTGGCTTGGCAGTCACCAGGTATCCCAGAATATGATACAGTCAAGATCTGTTGGTGGCTTACAGTTTCCTCTACAGTTATGGAGTCTTGGTATAGTGTTGACATTAGCTGGAGTGAGGGGGAAAGTTTGAACTTCCCAAGACTGGTGGGCTGCAATATTTCCTGGCGGAGGATAGAGATGGATGCCTCAAGATATCCACGCACGAAGCAGCAATGTGTGCTGCACACCACACGCAGCCTATTGCTTTCTGTGGCAGGCCTGTTCTAGCCAGTCTGGCTCCTTCTCTAGGAAAGGGCTAACCAGATCTTTGATTGGGTAGCAAGTTCCAGAAAGACTGATCAGAATCAGCTAAAATGGAGACCTAGGGATACTATCCCAAAGAGAAGTATCTTTTGTCTGCCCCTGACAGTCCTTAAGCTTACTGTGCACTGCTACTGTTGCCGTTTCTAAGGACTCCTAATACAGTTAAACCAAACTACGTTTGACAACCTTCCTAATTTCAGCTTATTCTCAGGTGAATACTCTAAAAGCAAGTAAGACTTTAGATGAGCATTTTCTTAACTGCTACATAATAGTTTCTCAGGTTATATTTTTTAAATATTTATTTATTTATTTTATGTATAAGTACACTATAGCTGTCTTCAGACACACCAGAAGAAGGTATCAGAGCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCAGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTTCTCAGGTTATTTTTGCACTTTAATATTTTAAGGAATTTCAGGCTACTTTGCTTTGAATTTTTTATTTTCCTGGAAGATCTAACTCAATGGTGGAGTTTGCTTAGTATGTGCTTAGTATGAGATATGATTACTAGTAATTCCCTGCCCACCCACCTCCACTGTGTATTTAAAATTATATTTTTCTTCTTTTTAAATGATTTTTGTTTTTATTGATGCATTGCTGTTTTGCCTGCATGTATCCCTGTGTGAAAATGTCATATCCCCTGGAACTGGAGTTATAGGCATTTGTGAGAGCTGCCATGTGGGTGCTGGGAATTAAACCGGAGTCCTAGGGAAGATCAGTGCTCTTAACTGCTGAGTCATCTCTCTAGCCCCTAATTACTTTTTCTAAAAATTTAAAATGTGTCCTTTGTCTAAGCTATTTTTAAAGTTATCTGTCCACTTGATTGAGAAAAGGTCATGCTATGTAGTCCTGGAAAGATCCTCTTACCTCTGGTTCAGAAGTGCTGGGACTGGCCTTGCCTAGGGTAGGCAAGCTCTATCACCCAGCACAAGCCTGCTCCTGGTCCCTAACCTCTGGTATTGATGAGGAAGGTGATTAGGGTCACATTACACCATGAGACCAACGTATGTATTAAGAGTAAAACAAATTTTTATAAAATATGTATAATCATGTAATAAAAATAAGATCTGAGCTGTGATTTAAGAAATGTCACTGTCACAAAAGAAAGCAGAAGCCTGGGGGGTTATTCTAAATGAAAGGCATGACAACAACAAATGCTGGGATTACAAGTGCACACTGCTATGCATGGCAGAATATTTTTTAAAAGACAAGATTTCCAATAGGGATAAAAGGACTAGATGAGTTTTACTATTCCTGAAAATAATGTTTAATATTTTAAGTGCTATTTTTAAAATATTGAAATGTGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGAAAGAGCAATATGAGGAAGAGAGACAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGGGTTCTTCAAAGGTTAAGAGTACCTACAGAGCACACTGGGTTAAATTCGCAGGGCCCACCAATGGATGTGGGGTGTATGTGTAATGGGGATTCTATAATCCCAGTTCTACAGTATCTGATCCTTCTGGTCACCATGGGCACCAGACCCACATACATGCAGACAAAACACTCCTATGTACTAAAAACAATAGGTAAATTCATCCCAATAAAGAAATAAATAAAGGAAGAAAAAAGAAAGAAAGAAAGAGAGAAAGAAAGGAAAGAGAGAAAGGTAGGTAGGTAGGTAGGTAGGTAGGTTTACAGAGATGGCTAAGCCATTAAATTCCTTGGCTGGCACAGCCTTAACAATCTGACAAAGGCCACAGGTCCTAAATGGACCTGGACTTCCACAATGATGAAAATGCTCTTAAATGGCATCCTCTAGGAAACAAACACACAGGGCTACCAGTCACATGCAATACGATGAGACTGCCCAAGGCAACCTAACTTCAATAGTCGGACATTGTTAGTGGCTGCTACACAGACTAGCCCAGCCACAGATACCGCATCCCTAAAATCAGAGATTTTGTATAAAAGTTCAGAGAAACTTAGCTCAAATGATATTTTTTTCCAAAATTACATTTACTCTTACTTTTATGATTAAGTACTCTGTACTTTGGGAACAGAAGTCTTGTTTTCTTTACTCCTTAATCTGAGAGAAAAACTTAAATCAAAAATTACTTGAAACAGTCACTTAGAAAAGCCATTTGGTGAGAAGTGACAATTGTAACCAAATTTTTTCACATTGAAAATTGTTTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGGTGTGGTGTGTGTCAGACTCTGAAGCAAGTGCCTTTCCCCACTGAGCCATCCTGCTAGCCTTTATGGGTTAAAAAAATACCAAAGCAAAGCAAGTAAATGCAAACATCCTAAGTCCTAAGTATTTGTACTTTTTGAAAATTTTGTTTCCTCTTTCTTTTTTTATTGGCTATTTTATGTATTTACTTCTCAAATGTTATCCCCTTTACCCCCCTTTCCATACCCCATTCCCCACCTCTATGAAGATGCTCCCACTCCCGAATAGCATCTGAGATCGTGTCTGATGACTTCTGATGCTCCACACATTATTCTAAGCTTTATATCAGAGTAGCTTTCAAATCCTTGCTTCTTTTATAGAGTAAGAAACGGAGGATTAGAGAGATGATCTTAGTTTATCAAGATCACACAACAAATTCCCTTCGGTCTGGGTTGTCTGACTTCAGTGATATTATTTTTATTTTGTTTTGTTATATTTGTCTTTGGCTTTTTCAAGTTAAGGTTTCTCTCTGAGCCCCAGGGGTCCTAGAACTCACTCTGTAGACCAGGCTAGCCTCAAACTCAAGAGAACTGCCTAGTCTGCTCCTTCCCGAGCGCTGGGATTAAAGGTGTGCACTGCTACCAGCTGCTCTCCAGCCCAGGGTTCACACTTTTTACCATAATGTTTTTTGTTAAGTTAGTATTTTCTGTAATGGCTTATAGGAAGATAAAGTACATGTTATCAAAGCTATAAAAGTTAACATGTGAACTAATGCCTATAGACAGTTTTAATTTTTCAATTAATAAAAATTTTGCCAACATAAAATGATTGTAAAGTTGCAAAAATAAAAATAGGATAAAATTCTACCTACAACAAACACATGCACAGCTACATAAGTTCCTGATGATGTCAACATATTAATTAGGAATATTCAAACTTTTTAAAATAAAGACAAAAAAAGGGTAATTGGTCATAAGTGTTAAAAAAAATGCCCTCTGCTAAACAATTTTCAATGTGAAAAAAATTTAAGTTACAAGTTGTTACTTCTTACCAAATGGCTTTCTTAAGTGACTGTTTCAAATAATTTTTGATTAAGCGTTTCTCTCAGATTAAGGAGTAAAGAAATTTAATAAGATTTCAGTTTCTAAAGCACAGGGTACTTAATCATAAAAGAGTTGTAAAGGCCTCTCTGGACCATAGCCTGTGCTGGGAACCTGGATTTGGTGCTAAATACTGCTTGCCTCAGCCAGAGGTATGCCAACTGAGGGAAGCTGTGAGTGATAGTGCTGGCAGTGCCCAGGGAGGAATAAAGGACACAGGATACCACTCAGATTTCTTCCTTCTCCATTAAAGGTCCTCAAACTCTTGGTAGATCTCCTCATAATAGTTCTGGGTAGGGCTGACTTCAGGGAAAGGATTTGTGGGCATAGCAGCACCAGTCCTGGTCACTTCTCCTGCTTCCTGGTTATGTAAGTGGGTCAAGAACAATAGCAGAGCCTTGTATAAAGAATGCAGGACAAAGACTGGGTATGTCTCTGGGTTCAGTCCTTACTGAGGAAATAAAATAAGCTAAGTGTAGCAGTGTAATCCAAGGCCGGCCTGATATATATGTCAGGATTCTGTTTAAAAACAGAAACCCAAAAGAATGTATGGTCTGAGTGAGCTGTTCCCTTCAACAAGGGCTGAGCTGAGTAGGGCCTAGAACCTGGGCTGTTACAATAAGAGGCTGTACTTAGTGTGCTGCTGTGTTTCTAAGTGCAAGCCAAGGACAGAGGGAAACACTCAGATCAGAACACACAGTTCAAAATGTGGTCAGAGCAGGAGTTTAAGGGTGATCCCAAGCAAAGGAGGCTGCACTAGCTCTCTGGTACTAAGACTGAGATATGGACCATCGGGGAAGCTTAGGAGCATGAGCATTCACCTGGACTAAACTACACCATGATTCCCACCACAATGGTTCACTCCACCAGGCAGATTCCCACTCAGAGAAAGCAGATAAGACATACCAAGGTATCAAACACATAACTTGTCTGATGTTTTACACATTTACTTTAG
Seq C2 exon
GTAGTAAAGGCCTTTATTGTCCTAAATCCTGATTACAAACTCCATGATCAAGAACAACTGAAAAAAGAGATTCAGGAGCATGTGAAAAAGACTACAGCACCTTACAAATACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246:ENSRNOT00000020039:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]