HsaINT1002661 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20792236-20796489:+
Coord C1 exon
chr16:20792236-20792335
Coord A exon
chr16:20792336-20796369
Coord C2 exon
chr16:20796370-20796489
Length
4034 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GTTTCAAATATTTATTTTAGGTA
3' ss Score
8.53
Exon sequences
Seq C1 exon
CTATCGAATTGGACCATTTGAGGTAGAAAATGCCCTGAATGAACACCCTTCAGTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAGAGGAGAG
Seq A exon
GTAAAAGAACTGATTCATGTCAACTTTATAATTTGTTGGCAATTTAACACATACTTACAAACAGTAGCTCAGTGAAACAGAATTAACCAAATGATTCATTTACTAAATATGCAAGTCAGATAGAAATATGCTAGTCAGAAAGAACTGCTACAAAATAAGATTGAATTATGAGTTGCAGCTCTGATCCTAACAGACAAACAAAATAAGGCTGAAAATACGTACTAGAAAGAATTTGAATTCCTTCCGTGGTGGACTAGGGCAAAGATGGTGTGAATGCCAGTAACCCAGGCTCACGTCAGGATGGGGTGACAGAAGTCAGCTGGATGGGATCAAATTGTTACCCAGAAGGTCTGGAAACCAACGAGGTCCCTGGTGTAGTGAAGGAGAATGGGCTGGCATCAGATGTCAGAAGTGGGAACCAGAGGCTGGAACTGAGGTAACCATAAGCAGTCTTGGTAGGTAAATAAGTAGAGATTTCAGGAAATAAACTCTGAATAACACAGGTGTCCTGAAAGCCCATTCCTATTGGGGCTGACCACACAGTATTTTGGCTTAAAAGTACCATGCCAGGCAGCCTCCTGCGTTTTGCCTGTGTGTCTACAACATGCCCCTAGGGTTTCTCTAGCTGAGTTACAAGTTCTCACAAGTATTTCTTCAAGCCATATCCCTTCTAACACTGAATCCAAGTTTTGAAGATGACACTGATGTCAATACAAATCCAGAACTTTCTGTACCATGTATTCAAGCTCCTTATCTCAAATCCTAGGTATAGGGCTTCAAGCACAGGGCACAGGGCAGAGTTAGAAGGTATCCAATCTCAGGGGATGAAATAGGTCCTGAAGTTTAAGGCAGGCCAGGCACAGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTGAGACAAGCCTGGTCAACATGGTGAAACCCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCATGGTGGCACACGCCTGTAATCCCTGCTACTTGGGAATCTGAGGCAGAAGAATCACTTGGACCCGGGACGGGGAGGTTACAGTGAGCCAAGATCGTGCCACTGTGCTCCAGCCTGGCTAACAGAACAAGACTCCGCCTCAAAAAAATAAAAATAAAAATAAAAAAGTTTAAGGTAAAAATAGGAGATGTGCATGTTACAGTGGAGGGTGGATCTCCCCCCAGGACTGATTCCCCTAACTGATCTTTGATGCCAGAAGATACCCTGTTAAGTCCTCCTGGATGGCCCAAAGTTGTTCCAGATATAGCCCAGTGGCTGGGAATTGGTAGTTTGTCAAGTTGCTAGGATGACAATCGCTATTTACTGTGAAAGGGTATATTCCAGGCAGCTGAGGGCAGGGAAAACAGTCAGTGATTATTGGCTTGTCTCTTTGCTCTGAACATCATCGGCAAGGTTTCACGAGTCTTAGCTCTTCCTGTACTTCTCCCCTACCATTAGTCATCATCAGTTTTACCCACCTAGACAGGTGCTTACTAGGGACAGGATGGTAGCTGAGCCTTTCGGAACAGGGTTAGCTTGGCAGCCACCTGATATCCTAGCGTACAATATAGGAAAGGTCTATAAGTGGGTTGTGGTCCCCTCACAGCTCCGGGGGCTTGGCATAGGGCTTGGATTAGTCAGAGTGAGGGGGAAAGTGTGGCCAGTTTTCCAACAGTGGTAGGCTGCAGCATTTCCTAGTAGAAGATGTGAGTGGGTATCTCAAACGAGGTATCCATGAACAAAACGGCCATGTGCTCCATGCCTCCCTTTCTGCTGCCAGGCCTATTCTACCTGGGTTAGGTCCTTCTCTAGGCTGGGTCCTGCCAGGCAGGGTAATTGGGTAGCAAGTTCCAGAATTGATTAAAAAGAATATTTGGATTTGAAATACCATTTTAACATTGGAATGTGAAAGACTTGTGGAATATGTGTCTAGATCACTAGGTTCTTAAATTTTTGGGATCACATATCTCTTTGAGAATGTGAAGAAAACCATAGGCCACTGTTAAGACTTATGCAGTGATGGAAATGTTCTATATTTGCACCATCCAATGCGATAGCCATGCATGGCTATCAATCACTTGAAATGTGGCTAGTGTGACTGAGAGTATTTAATCTTATTTAATTTTAATTGATTTAAATTGAAATAGACACACGTGGCTAGCAGCTATCATATTGAATGGCACAGCCATAGACTTTTCTCAGAAAAATACAAGATTTTGCATAGAATTTCATAGAGATTTGAAGCCCACTTATGGATTCTGGGTTAAAAAATAAGACCCAAACTTCTTGTAATTCTAAGACTACAACTAAGAGCTAATGTTTTTGATGACTTACTATGTGCCAGGCATTATACATCTATGCTAATTCATTTAATCATCATAATCTCTTTTACAGAGAAGGAAACTGAGGCACAAAGAGATTACCTAACTTGTCCAACATTACACAACAAACTGTGACTTGAACCCAGCTGTTCTGACTTCAGAGTTCATACTCTTACCCATGTTAGGTTGTTCCTTGTTAATTTAACATTTTCTGCAGTAGTTTAAAAAGATAAAAGAGACTATCCAAGTTGTAGAAATCGTCAATATGTGAACCAGTATTGCAGTTTTTAAAATAATTTACCTTTGAATGACTCACTTACAACAAGCATAATTTTTTAATTTGTAAAAATGTTAATGCAGCAGAGCTAGCATAACTACAAATGCATTTTATAAAATGTCAAAAAGTGAATGGAACAAAATTATATCCATAGACACACACACACACAAGGGTTCACAACTGCCGCATGGCACATGTAAATTAAAAATGTTCAAGTGTTGTTGTTGTTTTTTTTCTTAGAGACAAAGTCTCACTATGTTGCCCAGTCTGCTCTCGAACTCCTGGGCTCAAGCAATCCTCCCACCTCGGCCTCCCAAATGTTGGCAGTACAGGCGTGACCCACTGTGCCTGGCCACAAGGGTTTTGGGTAAAGACAAAAATGGGTAATTGTTCATACAATGTAAAACTGCCCACTGGTGAACAGTTTTCAATATGTGAAAAAATTATAACTTCAAGTCTTTGTTTCTCACCAAATGGCTGTCCTGGTAATTTGTTGTTTCAAATAATTCCTTTTCAATGAAATCTTTACTCCCAGATCAAAGTGGATAGGAAATGTTGCCAGCTTATCTTTAAGCTGGACAAACGAATCCTTGAATTTAATAAGATTTCAGGCACCTAAGTGCAGGATACTTAATCATAAAAAAGCTTCAGGGGACTCTCCTGGAACTGTGCCTACAGGGAAGCATCATTCCATAGCCAGCTCCGGGCTGGTAATCTGGCGTTGGAGGTACATACTAGTTGATGCACCTAGACTCATGCCTCTAGGGAAGGCAGTAAATGGCAGTCCTGGTAGTGCCCTAGGAGAGAAAATGACAGGACTCCAAATTTACTTTTAAAGGGGGCTATGAGGGATGGCCTATCTTTCTGTCTTCTCCATTACAGGTCCAAAAACTAGGCAGAGTTTTCAAAAACATTTCTAGGAAGGATAAAATTTGGAGAAGAGGATTTGTAAGCATAAAGTAATAACATCTTTCTTGGCTTCTGCCAGTTAAAGGCCACCATGATTTCCACTCTTGTTCCTCAGGGCCATGGAAATGGATCAGAGCAACAAAAAAATAGCTGCTGGAATCTTCACAGCCTTGTATAAAGACTGCATGTTCTCTGTGAACTGTTCCCTTCAACAAAGACATGGCAAACTCAGCGTGACTACTGTTTATAAGTAATCCCCCATGCTGAGGGCTAGGCTGGATGAGGCTGGGTTGTTACAGGGGTCCCAGAAGCTCTCCTGTATTAGGTACAGACCAGGAAGTGGCTGGCTTAAGAGCACAGAGCTGGGATCAAACTTTATTAAAACACACTGGCCCACCCCACCAGGCATGTAGATTCTCAGAGCAAGCAAACAAGACATACTAAAACATACAAATGCATAACTCATTTTCCTGGTGTTTCAAATATTTATTTTAG
Seq C2 exon
GTAGTAAAGGCTTTTGTCGTTCTAAATCCTGATTACAAGTCACATGATCAAGAACAACTAATAAAGGAGATTCAGGAGCATGTTAAAAAAACTACAGCACCTTACAAATATCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF0050123=AMP-binding=PD(1.2=2.4),PF131931=AMP-binding_C=FE(63.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains