HsaINT1003171 @ hg38
Intron Retention
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32183555-32183987:-
Coord C1 exon
chr6:32183881-32183987
Coord A exon
chr6:32183751-32183880
Coord C2 exon
chr6:32183555-32183750
Length
130 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CCCTGCTTCTCTGCTTCTAGAAC
3' ss Score
9.8
Exon sequences
Seq C1 exon
GGGCAGTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCTGAAGTGTAAGGGGGCCCCCAAGAAACCACCCCAGCGGCTGGAATGGAAACTG
Seq A exon
GTAAGCGGGGCTCCTGTTGCAGCCTCCCAACTTCCAGGGAGACCAGCAATGATTTGGATCCCCGTCACTCTGCCTCACAGTCCTTTCCCAAAGGCCTTGCACTGTTTAGGCCCTGCTTCTCTGCTTCTAG
Seq C2 exon
AACACAGGCCGGACAGAAGCTTGGAAGGTCCTGTCTCCCCAGGGAGGAGGCCCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGGATCCAGGATGAGGGGATTTTCCGGTGCCAGGCAATGAACAGGAATGGAAAGGAGACCAAGTCCAACTACCGAGTCCGTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305:ENST00000375076:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(35.0=97.2)
A:
NA
C2:
PF138951=Ig_2=PD(63.0=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGGTGCTGAAGTGTAA
R:
ACGGACTCGGTAGTTGGACTT
Band lengths:
253-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains