MmuINT0012625 @ mm10
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34598141-34598572:+
Coord C1 exon
chr17:34598141-34598247
Coord A exon
chr17:34598248-34598379
Coord C2 exon
chr17:34598380-34598572
Length
132 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
GGTTTTTCTCTTCTTCACAGAAC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAGCTGTAGCTGGTGGTCAGAACATCACAGCCCGGATTGGAGAGCCACTTGTGCTAAGCTGTAAGGGGGCCCCTAAGAAGCCGCCCCAGCAGCTAGAATGGAAACTG
Seq A exon
GTAAGCAGCCCCACACACACGCCTGGCCACTCAACCTCAGGAGTTACCCTTGAGGGTCCCCAGCACCCCACCCTGCCTAGGCAGCTCATCCCCAGAGGGCCCAGTCTGGTTAGGTTTTTCTCTTCTTCACAG
Seq C2 exon
AACACAGGAAGAACTGAAGCTTGGAAGGTCCTCTCTCCCCAGGGAGGCCCCTGGGACAGCGTGGCTCGAATCCTCCCCAATGGTTCCCTCCTCCTTCCAGCCACTGGAATTGTCGATGAGGGGACTTTCCGGTGTCGGGCAACTAACAGGCGAGGGAAGGAGGTCAAGTCCAACTACCGAGTCCGAGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452:ENSMUST00000015596:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(34.0=91.7)
A:
NA
C2:
PF138951=Ig_2=PD(63.9=95.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACTTGTGCTAAGCTGT
R:
CTCGGACTCGGTAGTTGGACT
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types