HsaINT1003185 @ hg38
Intron Retention
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
Coordinates
chr6:32170937-32171505:-
Coord C1 exon
chr6:32171297-32171505
Coord A exon
chr6:32171071-32171296
Coord C2 exon
chr6:32170937-32171070
Length
226 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
3' ss Seq
CCCTTGCCATGACCCCACAGGAT
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTGGCCAGAATGGATTTGTGGCCAGGGGCATGGATGCTGCTGCTGCTGCTCTTCCTGCTGCTGCTCTTCCTGCTGCCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAATGGCTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTCGAGAACATGAA
Seq A exon
GTGAGGGGCAAGGGGTCTTGGGCAATGAGGGAACCTAAGGGTACAAAGTGAGTAGTGGATTGGGGGAAGGGGGCATGGTGTGTGTAGAAAAGACTGAGAGAGACCAGAGACAGGGAATGGGGAGAGGACTGCAAAGGTGGTCAGAAAGACAGTAAGGTGGGGGGAGCTGAGGCATGCAGATGGACATCAATGGATCCCACTGGGACCCCTTGCCATGACCCCACAG
Seq C2 exon
GATCTTGCGTCTAATGCTGCTCCACATCAAATACCTGTACGGGATCCGAGTGGAGGTGCGAGGGGCTCACCACTTCCCTCCCTCGCAGCCCTATGTTGTTGTCTCCAACCACCAGAGCTCTCTCGATCTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310:ENST00000336984:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGGATTTGTGGCCAGGG
R:
ACAACAACATAGGGCTGCGAG
Band lengths:
305-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains