HsaINT1004469 @ hg38
Intron Retention
Gene
ENSG00000141748 | ARL5C
Description
ADP ribosylation factor like GTPase 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr17:39165079-39165760:-
Coord C1 exon
chr17:39165715-39165760
Coord A exon
chr17:39165140-39165714
Coord C2 exon
chr17:39165079-39165139
Length
575 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCTTCCTCCGACGCTTCCAGAGC
3' ss Score
7.94
Exon sequences
Seq C1 exon
ATGGGACAGCTGATCGCCAAGTTAATGAGCATCTTCGGGAACCAGG
Seq A exon
GTAAGGGGCGCACAGGGCATCCAAGCGAGCGCTTTGATCTCGCCCTCTTCTGGGACTCCTCTGATCTGTGGTCGGACGCACGGGGGGACCTCGGGCTCCGAGGGTCGTATATGGGCGCTCCTCGACTGCCCCGCGGCCTCCCCTGCCCCCGTCCCTGCCTGCTCCTCTTGGGTCCCGGCGCTTCGGTGCGCCCCAGGACGCAAAGCTGGGCGACCCTCCTTTCTCCCCGCTAAACGGAGCCAGCGGCGGGGATGGGGGGCTGCTGCGAGTTTCCTGCGATTGTGACTTCGCGTTATGCTCTTTCTCTAAACACCGTCTCTTGGCAAGCCCCGAAGCGCCCCGGGCCTTTCAGACACTTTTCTGGAATGTGAAGGGAGGTGGGGGCTCAGCTGTCTTTTCCACCGTCCCGGAGTGGGGCAGGTGTCGGAGCTGGGTGGGAAGCAGACGCGGTACGGTGGGCAGAGGTCCCCAGCCTGCGGGGAGCGCTATCTCCTTCCTGGGAGGTCTGGTGGGGGCACACAGTCCCTTGGTCTTCGGGTTTGGCCCTGACGCTGCCCTTCCTCCGACGCTTCCAG
Seq C2 exon
AGCACACGGTCATCATCGTGGGACTGGACAATGAAGGAAAGACCACCATTCTCTACCGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748:ENST00000269586:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PU(8.9=93.8),PF0002516=Arf=PU(8.5=93.8)
A:
NA
C2:
PF128032=G-7-MTase=FE(11.9=100),PF0002516=Arf=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains