HsaINT1004470 @ hg38
Intron Retention
Gene
ENSG00000141748 | ARL5C
Description
ADP ribosylation factor like GTPase 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr17:39162711-39165139:-
Coord C1 exon
chr17:39165079-39165139
Coord A exon
chr17:39162859-39165078
Coord C2 exon
chr17:39162711-39162858
Length
2220 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
GCCCACTCCTACCTCCCCAGCTT
3' ss Score
6.02
Exon sequences
Seq C1 exon
AGCACACGGTCATCATCGTGGGACTGGACAATGAAGGAAAGACCACCATTCTCTACCGGTT
Seq A exon
GTAAGTGACTCTCGGGCGGGGAGGGTAGAGAGCTGGGCCTCCCACCAGACTGACAGGCAGGGGGACCAATCACTGGAGCTCTTCCCTGGGTTCCCGGGCTCCTCTGTAGTCCGGAGGAGCGATTGGGCACGCTGCTTGGACCTTCCTAGTACTGCGGCTCCTCGGTCTGGCATTCAAATCCTGCACCGTACAGGCAACCCTAGCTCCCACTGCTTTCCTCCATCTTCCCGGGGGCCCTGCCAAACCCAGCTCCAGGCCTGCCAAGTGTCCCAAACTGCCTCCCTGCTCTTCGCTCCCTCTAGCGGCAGGTCCCTCCTTTCTCACCCCTGTCCCCTCTGCCAGTTAACTTTCTTCCCCTTCTTCAAACCCAAAGGCTCACTGAGGCTCTGTAGCTCCTGGTCTAGCAAGCCTGGCACATATGGGTGGTGCTGAGTAAATACCGATCGCAGCTTTCCCCGATATTCGCTCTCTGGATGGCACCTCTCCCATTTTACAGCCTCCAAAGTACTTTACTTAGGAGAAGCTTTTCCATGAAAAAGTAATACATGTAATGATTTTAAAAAATTATAAAGGAAAATTTCAAACAATGGAGGAATACACGGTGAAAAGTAAGTTTCCTTCTTGCCTCTGGCTCCTAGTTTTCCTCCTATTGTAACTTTGCGTAACTTTTCAGAAGCATTATTTACATATAAAAGCATGTGTATATTTTCTATGTCACTTTAAACAAAGCACCTCTCTGATGTCCCTCACTGTGTCTGTCTCATTTTTCTAAACTCTTGCTCCTCAAAGTGTGGTCTACAGACCAGTCACACAGGCATCACCTGAAAGCTTATTAGGAATGCAAAACCATGGCCGGGCGCTGTTGCTCTCAAAGTGCCTGTAATCGCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGATCAGGAGTTCAAGAGCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAACAACAACAACAACAACAACAACAAAGGGCTGAGCAAGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCTGAAGTGGGTGGATCTACCTGAGGACAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAAAATATAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCACCTACTCTGGAGGCTGAGGAAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGACTGCGCCACTGTACTCCAGCCTGGGCGACAAAGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAACCTGGGCGACAGAGAGAGACTACATCTCAAGGAAAAAAAAAAAAAAAAAGCAAAACTGTGGCCGGATGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGTCCAAGGTGGATGGATCACTTGAGGTCAGGAGTTCGAGACTCGCCCAGCCAACATGGCGAAACCCCGTTTCTACAAAAATACAAAAATAAGCCTGGCGTGGGGGTGTGCTCCTGTAATCCCAGCTACTCAGGAGGCCGAGGCGGGAGAATTGCTTGAACCTGGGAGACATGATCGTACCTACACTCCAGACTGGGCGACAGAGTGAGACTCTGTGAAAGAAAGAAAGAGAGAGAGAGAAGGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGCAAAAGCCTGGACCCCTGCCCAGACTCACTGGGTCAGAATCTGCATTTTGACAAAACTCTCAGGTCATTCAACTGCATATTAAAGTTTGAGGAGGCTGGGCTCTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCTCTTGACAGGAGCCCAAGGTCAGGAGTTCAAGGTAAGCCTGGGCAACACAGTGAGACCCTGTTTCTATAAAAAGAAAAAAAGAGATAAAGTTTGAGGAGCCTCCTCTAAGATGTTTCCCTTCTCTGGGGTCCAAGCCAGGGCAGGGCTTAGTCTCACTCCTGTCTTCATTCCCCAGGGCCCAGCACGGGGCCTGGCTCCGAGCAGGTGTTTGGTGAACCTGGGTGGACTTGTTCTGAGTTAGATTCAGACTGCTTTGGGAGTAGAGCATTTGGGGGCCAGAGTTGGGAGTAGGCTGGACTGAGCTCTTGGTGCCCACTCCTACCTCCCCAG
Seq C2 exon
CTTGACCAATGAGGTGGTCCATATGTGTCCCACCATTGGCAGCAACGTGGAGGAGATCATTCTGCCGAAGACCCACTTCTTCATGTGGGACATAGTGAGACCTGAGGCTCTGAGCTTTATCTGGAACACATACTACTCCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748:ENST00000269586:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(11.9=100),PF0002516=Arf=FE(11.4=100)
A:
NA
C2:
PF128032=G-7-MTase=FE(29.2=100),PF0002516=Arf=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains