HsaINT1004765 @ hg38
Intron Retention
Gene
ENSG00000198513 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
Coordinates
chr14:50629995-50633068:+
Coord C1 exon
chr14:50629995-50630009
Coord A exon
chr14:50630010-50632228
Coord C2 exon
chr14:50632229-50633068
Length
2219 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTTGATGCTTTTATTCTAGGCT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GGAAGTACAAATGAG
Seq A exon
GTAAGTTAAATTTTTTAAAATTCAGAGCTATGTATGTGTAAACATTATGATATTATTTTATAAACTGACTAAGCCATTAAAAGATGTCTTTATGTAGATTAGAACAATCTTTGGTGACTTCTAACATTTAAATTTGTAATTGTGAATTTTTAACATGGTCTTAAAATATTTAACTTTTTCTAGACATCATGTATGATTTGATCTACACACACACAAAAACTAAGAATTGAATATCATCAGTATTTGTTTCATGAATGTGTAGAAAACTTCAAAATTCTTAAGCTCTGAAATGGTGGACTCTGCTGTACTGCAGAGTAAAGCAAGCAGTTATGAAACCTGAGGAAATGTAACTACTGGAGGGTATTTATTTAAATGTAGCTACAACCTTTAGAAGTTGTTTTCAACTTTGGCTTTTGACTGACAGTAATACATACCACTTTAAGCAGGGCCCAGGCCAGTATGTATTCTTTCTTGGCAGACCTCAGGCCTGACCTGTAAATTAGTGTTCATTTCTCCTACCGCACATGTGCAACACTACATATCTCAGAAAAGACTCTAGGCATCCACGAAGGAATCATCTGTTACACTAAGAAAAATTACCACTCTGGAATCATTTAGGTCATTATCTTCAGGAAGCAAAGCTGATCTTGAACAACTATAGAGATAATTCTTTCCTCAGTTTCTACTGTGGCATATAATTGGATTATGTCCTCGAATCAAATACCATTTACTATTTACAAGTCAATAAGAAGTTATTTTATGCAAAATTCAGTAAGCAAGTTCATTAAAAAAGCAAAAGCAAATTTCAGCTTTGTAAATCAAAGCTTAAGAAAAAATATAAGAGAATTAGAATTAAATTGAATGCCTTAGAATCAGAATATAATGGAAAACAATACTATGTTGCACCAATATACATTCACAGATCTGAAGATGGTACCATACAGACGTAATGCCATAAGAAAATCAAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGTGGGCGGATCACGTTAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAGGCCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGTGGCAGGCACCTGTAGTCCCAGCCACTGGGGAGGCTGAGGCAAGAGAATAGCTTGAACCTGGGAGGAGGTTGCAGTGAGCCAAGATCGTGCCACCACTGCATTCCAGCCTGAGCGAGAGAGTGAGATTCCAACTCAAAAAGTAAAAAACAAAAACAAAAACAAAAAAAAACCAGATCCAAAGAAAGTAGGTATAGACTCACAAATGATAAAAATTAATGGAATTTCCTGGGAACAGATTACTATTTAAAGGATCTCAAGCTTTTATGCAGCTTTTAAAAATATTCAAAGACTCTTTACGAACTCCAGAACTAAATCAGACAAGTCATTTGTAACTGACTGTCAAGTATGTGAAAGTCAGAGGAGGGGATGAAATCTTAGACACTAGCTAACGGGGCCAGGAAACAAAGATATCTATGAACACTTATATAAAGCAATATACAATACACAGAGATTCCTATGATTCAAACATCATTAAAAACCCACAGAGAACAATAAGAGGTAGTTTTAAATGAGGAAAGCTTGCTGAGGTAATGTTTTTGAATAAGGTTTGTAAGATATTAGCTAAGTCACGGAAACAAGGCAAGAGCGTGTAAAGTGAAGGATCCTACTGTGCTGGGGGAAGGACACCATATGTGCTTAGCTGCATGACTGTATCAGTAAATGATGGAGAATAAAATTGGCCCCACTCAGGAAAACACTGGAAGCCCAGAAAGCAAGTAGCCTAGCTATGCATAATAGTTACTGCCAATCAGAAGTTATGAGGTCTTACAATTCATCTAAAACTGCTAATATTCACAATTTGAATTTTCAGCACACCCCTGGGGCAAAGTAGAAGCTCACTGCTCCAAGAGGTATGCAAGGTAAAAGGAAACACAGTTTGAGAATAAAACATTCACCACACAGGTCAACACACAAAAGTGTTAATGCACACATTGAGGAGTTGAAAATACTTTTGAATTTTAAGATAATAATTTATATATCGATTAAAAAAGATTTCAAATTCAACATGCTAAATTTTATACAGTACGATAAACTAAAAAGGAAAAAATTTTACATCTGTGTGTTTAATAAAATGTTTTATAATTTTGATGCTTTTATTCTAG
Seq C2 exon
GCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTTCCCTACACCAAAGTCGGAATCTACTGAACAATCAGAAAAGAAAAAAATGTAATGCAAATTTTAAGAAATACAGGTGCATGACCAATTGTCAATTAAATATTCAGTTTTATGTCTCCATGCAAACATTCAAAGTGCTTCCATCAGAACGGAGTAAAATACTAAACACCTCTGAAGACTGCAAACTGGATTAGTTCTTTTACTTCAGTGTTTAATAAGCAGATGTATGTATGCATGGTTATACTATTTTGTTAACATGTACAATTTCCTGATTTTTCTTCAAAAATGCTGTTATAAAGTATTTGTCTATTTATGATAACAGTACACGTGTTCTGCTTGAATTTACTAAATTCTACTACTGGGTTATAATTAAATCATGTGATATTCCACGTTTGGATATGCTCATTTAATTTCTACAGAAAAAATTTTAAATTATTTCACATTAGCCATTTGTTAAAACACAGCATCATAACTCAGCAGGCTGGATTTAATCTGTATCATCTTATATATATCACAATCTTATTTTTAAGCACATTTTAGAGTTCCTTAGTTGCTTTATCAAAAACCAGATATTGCTTTTACATGGTTTAATAGAATATAAACCTCTTGATAAAAAATGCACAAAAAATCACTTTGTATATGTGAGTTTCACTGCATTGTATATTTTTTCATTTGGTACACAAAGAATGTATTCTTCATAGGTTTATTCTTTTAATATGTGAACTATTATTAAAGTTTACTCTGGTTCCTAAGATTAAAAACAAATGCTTACTGAATTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198513:ENST00000358385:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.299
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains