RnoINT0022634 @ rn6
Intron Retention
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92366752-92370421:+
Coord C1 exon
chr6:92366752-92366766
Coord A exon
chr6:92366767-92369626
Coord C2 exon
chr6:92369627-92370421
Length
2860 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCCTGATCCTTATATTCTAGGCT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GGAAGCACAAATGAG
Seq A exon
GTAAGCTAACATTTTTTAATTAACAGATATATTATTCATAAACATGATATTCCTATTTTATAACTGACTAGGTATTAAAGGATATTTTAGAGTATAATCTTAGAAAATACTTCTTTAAAATGTAATTCCAAATTTTATGTAGGACTTAATTTGAACAAAAGTGTCATTAAAGGATGTTTGATTTCAGTCCTGTGTAGAAAAGTCCTTGTTTTAAGCTCTAATGTTGCAGTATTTATTTTCCCCATATTGGTCAAATACTGGACAAGCAGACACATACAGAAGCAAAGGTTTAATTGGCTTAGTGTGAGAAGGGATTGTGGCAGGGAAGGCAGGCGCCCGAGGCCGCTGCAGGCAGGATCAGAGAAAGATGGACGCACCTTCTCTTTTATTGTCTGAGACCACAGCCGCGGGACAGGGGGTCTTGCTCACCACGAGGCTAGTTGTTCTCTAGTCAGTCTTTCTGGACACAAGTGCGTAGACATACCCAGAGGTGCTCCCACAGTGATTTTAAATCCTGTAAGGTTGGCCATGAAGACTGACCGTCATAGGTGTCCCCTGCACCTCTGCAGTGAAGCCAGCAGGAGTAGAATCTGAGTAGATTCCACTGAGGAGGGGATTTAGTAAACTAAATTCACTAGAAGAACGAAACAAATTGCAGCTTATACCTAAACCTTGGGTAGGGGAACTTAATACCTGAAGAGAACTGGAATTAACCTAAGTATCCTGGGAGCAGAACGTGCCAGAACTAGGGTGACACCATGCTGTACTAACCGCATTTACAGATCTGAACATGGCACTATCTATATTTAATGTTAAGAAAACAGCTGTTGGGGCTGGAGAGAGGACACAGCGGGTAACAGCACTGGCTGATCTTTCAAAGGTCCTGAGTCAATTCCCAGCATCCACATAGCAGCTCACAACTGTCTCTAACTGTAGTCCTATGGGATCTGATGCCGTGTTCTGCTGTGCAGGCAGGCAAAGCAGCCATATACGTAAAATACACTAATGAATAAATCGTCTTTAAAATGGAACATCTACGTAGGATCACAAAAGTTTTTTGAGAATAGCTATATAGATATTAAGCTTTTACCCAGTTCTTCAAAATATTAAAAAATCACACACTCCAGAATATGCCAGTCAGAACTGGGTGTTCAGTATGTGACAGAGGAATAGTTCTTACATAGTAGCCAAGGGGGTGGGGGATAAAGATACTTAGGAATACCAGAAATGTGCAATATGTAAATATGTGAATGCATGCTGTGGTGTACATACCTGTAATCCCAGTACTCAGGAGCTGGAGGAAGCAGGATCGTACATTTGAAGCTAACCTGGATCACATAGTGAAACTTTATCTCAGGAGAAGCCCTAAAATTCTTTGGATTCAAACACCATTAAAATAATACAAGGAATAATCAGAAGAGGTCATTTCAGTGATGAGAGCTTTTTGAGGTGGTGTTTCTGAGTGAGGTTCTGTGTAGTCAGAACTGAGTAGTGAGAACACTGCCGGAGAACACATGAAGTAAGGGAGCCCCGCTGGGGATGACCTAACACACACAGAAGACTGGAACAGTAGCCGGTTCTGGAAGAATACATTCACAGCAGGAGGTTACAGATGTAAGCTGTCTAAATCCGCAGTATTCCAATGTGAGATGTCCCCACGTCTGCGACATGGAAGTAGTGGGCTGGGACATAACGTTCTAGAAGACGCTAAAGATAAAGGAAGGTTGGTCAGAGAGGAAAAGCTTGATGAGCTCAGCCGTCAGCACAGGCTGGGGGGCTAACACTATTTTACATTTTAAGATAGCTGTGCTGCCCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGGCTGAACCCCCAGTGAACGTGATTGTTGGGGGGAGGGCGGTAATGGGGGAGGATGGGGAGGGGAACACCCATAAGGAAGGGGAGGGAAAAGGGTTAGGGGGATGTTGGCCCAGAAACCGGGAAAGGGAATAACAATCAAAATGTAAATAAGAAATACTCAAGTTAATTAAAAAAAAAAAAAAAAGATAGCTGTTCTGCGCGGTTTGTTTTACTGGAGTCCTCAGCTGCATGTGAAGTCTGTGGACCATGTGCATGCAGTACCCAGTGGAGGCCAGAAGAGGGCATCAGATCCCTGGGACTGGGACTACTAGTAATTAACCATCATGTGGGTGTTGGGAATTGAACCCAAGTCCTCTGAAGAGCAACCAGTGCTCTAACCAGCTAAGCCATCTCTTCAGCACCCACTAGTTAGTGTTTGGTAGAGGGTAATAATATAGAGAAGATATATCCATGTGGGACTGCAAAGAGGGCTCAGTGAGTAAATCACTTGCCATCAAGGATGAGGACCTGAGTTCAGATCTCCAACACCCACTCAAATGCCAGGTGGATGTGGTGGCCCACTGATAATCCCTTTATTTAGAAGATAGAGATGGGGTTCTTGGGGCAATCTTGGTAGCTAGACTGGCCAAACTGGTGAGAGACTTTGCCTCACTTATGATGTGAAAGACAATAGAGGAAGATACCCACCAACTTCTGGCCTACACACCCACACACCCACACACACACCCATATACACACGCTCATATACACACGCATGCACACCACATCCATATACATAAAAACTGTGTTTAAAAAGAATGACTTCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGAATGACTTCATCATGCTGAATTTTATATAGTAATGTACGCTAAAAAAGGAAAACGTTGTCATACCTGTGTGCTTAACATCTTATATCCCTGATCCTTATATTCTAG
Seq C2 exon
GCTTTATACAAGCTGTACAGTGCAGCAGCAACCCACAGACACCTGTATCAGCAAGCCTTTCCTGCACCCAAGTCAGAACCTACTGAGCAACCGGAAAAGAAGAAAATTTAATTTAAAAAGTGCAGGTGCATGACCATTTGTCAGCTGTCAAAGCTTTTGTCTCCATGCAAACATGCAAAGTGCTTCCTTCAGACAGAGTGAGACCCCAACACCCAAGGACTCGAACACTTTACTGCTTTACTCCAGTGTTTAATGAGCAGATGTATGTATGCATGGTTGGTTGTTAACACGCAGGTTCTTGATTTCTGTCTTTAAACATGCTATTATCATTTTAGGTATTTGTAAATTTGAGGGCAGTAGATTTGTTCTGCTTGACTTTTCTAAGTTCTACTACTGGGTTATAATTAAATATTGTGTGATATTACTCTGGGTTTGGATATGCTCCTTTAATTTCTATAGGAAATTTAAGTTATTTTACCTAGTTATTTGTTGAAGCACAGCATAACTCGGCAGGCTTGATTTTAATCTATATAATCTTATACATACCACAGGCTCTTATCTTGAGACATATTTAAGAGCTTAAAAGTTGCTTTACCAAAAACTATACATTGTTTCTTTTATATCTTTATGAATTAATATAGAATGTAAATCTCTTGATCAAAAATGCACAAAATTGTTTTGTATATGTTTGAGTTTCACCGCACTGTATATTTTTTCATTTGGTATACCACAAATGTATTCCTCATAGGTTTATTCTTTTAATATGTGAACTATTAAACTTTACTGTTTCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063:ENSRNOT00000046085:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]