HsaINT1004913 @ hg38
Intron Retention
Gene
ENSG00000124788 | ATXN1
Description
ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
Coordinates
chr6:16753233-16754091:-
Coord C1 exon
chr6:16754043-16754091
Coord A exon
chr6:16753348-16754042
Coord C2 exon
chr6:16753233-16753347
Length
695 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
CACTCCCTCGACCATTGCAGGAG
3' ss Score
7
Exon sequences
Seq C1 exon
GTTTTACCTCACAAAAACTACTACAAGCACCAAGCTCCCTGATGGAAAG
Seq A exon
GTATATGGAAGATTCATTCATTCTTTCTTTCATTCATCCATTCACACATTCACTCATTCATCATACAATGGAAAATTTTTACTTAACCATGTGCAAGGAATTGTGGCAAAATGAAAATGAGATGTACATTCAGTATTTAAATAAAGTTTAGTGGAAAGTTTAGTGAATATAAATGCACACTTTACACTTTTTTTCTGCATTTTTTCCTTTCTTCTATTCCATTGGACTGGTATGCTAATAGCTGTGCACTTTCATCATTGTGTTTCAAGTTGCATGTTGATAGATAATATATGCCACATTAAAATTAGGCTTTGGCTCAATTACTATTCAATCCATGCCCATTTTCACCTGATACTCCTTGTAGTTACCAGCATGTGTTTATCAGATGATTGGCTAGAATCATTGGAGAAAAGAATGACAGCGGCTGGCTCAAATGGGGAGACCATCCTCTTAATTTGATGGAAGGGATGACCTTTTTGTATGTTGGCCTCCCTCTGAGCCTTGTTGAGTAAAACCAGACCTGCCTTTTGAGCTGGCTGGGATCTGTGTAATTCTCATACAACAGAATGCCGAATGTGATGTTCTTAAAATTTGTATTTCGGTGCATAGACACTTAAGGTGGACTTATTTTTTAAAGCAGTCTATTCTGTTTTTCATTTTGGATTTCCTCTCCTGCACTCCCTCGACCATTGCAG
Seq C2 exon
GAGCATCGTGCATCAAGTCACCAGGGTGGTCCATTCAAGCTGCAGATTTGTTTGTCATCCTTGTACAGCAATCTCCTCCTCCACTGCCACTACAGGGAAGTGCATCACATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124788:ENST00000244769:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains