HsaINT1005384 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32979828-32980464:+
Coord C1 exon
chr6:32979828-32980132
Coord A exon
chr6:32980133-32980341
Coord C2 exon
chr6:32980342-32980464
Length
209 bp
Sequences
Splice sites
5' ss Seq
ACAGTACGT
5' ss Score
7.54
3' ss Seq
TGATAAATTTCTTTCATTAGCCA
3' ss Score
4.15
Exon sequences
Seq C1 exon
GCTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTACAGGTTATGATTCAGAGGAGGAGGAAGAGAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGCTGAGCCTGGACATCAACAAATTACCTGGGGAGAAGCTGGGCCGAGTTGTGCATATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCCAGAAGAGATTGAGATTGATTTTGAAACACTCAAGCCATCCACACTTAGAGAGCTTGAGCGCTATGTCCTTTCCTGCCTACGTAAGAAACCCCGGAAGCCCTACA
Seq A exon
GTACGTATGAAATGAGGTTCATCTCATGGTTCTGAGGACAGTTGAGGAAAGATGGTGGGGTCTGTTTGCATTCAGGATTGTCAGCTCCCAGGATAATGGGATGTGTTGGTTGGCAGCTGACGTTCAAGAAGGGAACTTGGGAACCTTAGGGGCCCATAATAAGATGCTTGGGGCAATCTTAATGTATCCTGATAAATTTCTTTCATTAG
Seq C2 exon
CCATTAAGAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAAAAGCGGGAATTAGAAAAGCGGTTACAAGATGTCAGCGGACAGCTCAATTCTACTAAAAAGCCCCCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=PD(13.0=40.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGAAGAGAGCAGG
R:
TCTCCAAAGCCAGTTCCTCCT
Band lengths:
295-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains