HsaINT1005389 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32976031-32976464:+
Coord C1 exon
chr6:32976031-32976169
Coord A exon
chr6:32976170-32976249
Coord C2 exon
chr6:32976250-32976464
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTTTTTTCCTTTTTTCTAGCGC
3' ss Score
10.82
Exon sequences
Seq C1 exon
CCCACTGATGATATTGTCCTAATGGCACAAACGCTGGAAAAGATATTCCTACAGAAGGTTGCATCAATGCCACAAGAAGAACAAGAGCTGGTAGTGACCATCCCTAAGAACAGCCACAAGAAGGGGGCCAAGTTGGCAG
Seq A exon
GTAGGAAGAGTGGGAGTTTTGCAAATGGACAACTAAAGATGGGGAAGAGAATCAAACTACACTTTTTTCCTTTTTTCTAG
Seq C2 exon
CGCTCCAGGGCAGTGTTACCAGTGCCCATCAGGTGCCTGCCGTCTCTTCTGTGTCACACACAGCCCTGTATACTCCTCCACCTGAGATACCTACCACTGTCCTCAACATTCCCCACCCATCAGTCATTTCCTCTCCACTTCTCAAGTCCTTGCACTCTGCTGGACCCCCGCTCCTTGCTGTTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.512
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(11.8=21.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAAACGCTGGAAAAGA
R:
GTGACACAGAAGAGACGGCAG
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains