HsaINT1006027 @ hg38
Intron Retention
Gene
ENSG00000179082 | C9orf106
Description
chromosome 9 open reading frame 106 [Source:HGNC Symbol;Acc:HGNC:31370]
Coordinates
chr9:129321016-129324905:+
Coord C1 exon
chr9:129321016-129321046
Coord A exon
chr9:129321047-129321791
Coord C2 exon
chr9:129321792-129324905
Length
745 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
3' ss Seq
CTGCCCTCTGACCTCTCCAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
AGGCAAAGCCGGGAGAAACTGCTGAGACGAG
Seq A exon
GTTAGGATTTAACCTTTAAATTCTGGAGCCATCGGAAACCGAGGGGAGGACGACGGGTGTCGGTGCTAATGAGGCTGGGGGCGGGCGATGCGCGGTGGGCCTCCGAGTCCGGGGCAGGTCTCGGGGGTTCCCCGGGGAAGGCCCTGGGAGCCCTTGGCCCTGGCGGCCTCCGCCATCAGACTGGGAATGTCTCTGATTGGGTGGCCAGGAGGCGGTGGCCCTCCTCCCCGCCCAGCTGAGGGGTGTCGTCTTCCGCGAAGTTAGGGTCTCACCTGGGAGGCAAGGAGGGAGGGGGCTGCCTGAGGCCCTGGGCCCCTCCGGGACTGGCGCACCCCGTCTCACCCACATTCCTTCGCCTTTCCCTGCCCAGTGTGGATTTCCAAAACCCATCCCCGCTCCCCTCCTTCCTTCACCCCAAGTCACCCGTTCCCAGCTCTGTTTCTTGCCCCACCCAGGGAGGGCTTTTCCGCACCTCAGGCTTGTCCTAGGGCCCCCAGACAGACAAAAACTGCGGCAGTTGAGGGGTGTTGTGCTCTCCCTAAGCCTCAATTTCTTCATCTGTTAAAGGCAGGTGATGAAAATTGGGCCTACCTGGCTGCTGGTCAAATGCCAGGGCTGCTGTGGGCCCAGCCTTGCATGTTGACTCTCACCTGAGCCAGGAGTCAGGAGATCGGGGTTCTAGTCCAGCTGGGAATTGTCCCAGTGTGAATTGGGAGTAAGAGTTCCTGCCCTCTGACCTCTCCAG
Seq C2 exon
GTGGCAGCGGGGACCACGTGAGATGGCGTATGTGGCCTTGAGCGATAAACCTCACCTGTCGGGGGAGGTGGGCGAGGAAGCCTGCAGCTCCTGGAACCCACCACTTTTCTCTCCCAGGCCCTTGCCCAGGCTGTGGCCTCTGCCTGGAACCCCTTTTCTTCCCATCCGAGCCCTTCCCTTCAGTGCCTCTTCCTCTGGGAAGTCCTCTCTGGTGCCCAGCCCGTCCTCTTCTGCCCACTCTGGGTTTCGCACCCCATGCTTAGGCCCTGATTGCCTGCTTTGCACACAGGGCTGTGAGCTCCATGAGGGCAGGAACCACATGGCTGTTCACAGCTGTGTTGCCAGGGCCTGGCCTGGAGACCCTCAGGAAGTGAGACATCTGAATCCTCTGCTCTGTGACCCTGGCAGCCAGGTAGAGCCATCTTGGCCATGGCACCCAGGCTTGGAGCAAGCAGCAGCCTCATGGGTGGGGAACCACGTTTCCCCAGCACATCGGCAGGCCCTAAGGGGACATTCGCTTGGCTCTGCCCTCAGAGCACTGATGCCCGGGGGACACTGCCCTTTGTGTGTCCCATGTAAGAGAGGATGCAACCTTAGAGGGGGCAGGGGTAAACATGGTCCCAGGCCCTGTTGTCCCCTCCTAAGAAAGTTCCCAGTTCTGCCTGTCCATCCCTGGCCTTTTCCCTGTGCTGTCTGGGACAGTGGGTGGAGCTGCCGCTGAGCGGTGGGACCTAGAAAACACATACTGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGGGGTGCAAAGGAAAGGTGGGTGAGGGAAGCAGAGAGAAATCATATTAGTAGCTCACACGTCAACAGTCTAGCTGTGTGCCTGCCTCTCTCATGCACTTCATGGGGATTATTTCCTAGAATTCCCACAAGAGCCCCTTGCAGGTGGTGCGATTGTTAGCTATAATTTGAAGATGAGGAAACTGAGGCACAGAGTAGTTAAGCAATGCACCCAGGAGCCCACAGCTAGGGAGGACAGAGGCTGGATCCAGCCCAGTCCCCTGTCTCCTGGGGCCAGGCCCAGCGCTCCCACCTCTCTGATAAGGATAAAAAGGAGGGAGCGGGAAGGGAGATATTCCAGAGGCAACTACCATGAGACCTCCCGGCAGAGAGGCTTGAAAACATCTTTTGTGTGTGGTACGCAAACCATTTCCCCTTTGGTGTCTCTTTGAAAGATTTTGGGAAGATTTAAACTTTTTTTCAATGATTTGGGGATGTCAGACTGGTGTTTTTTTGAGGGTGACACCGTGATGAGACTGGCCCCCAAGGCAGCCCCGTTTTACTCAGGTTATGGTAATAGAACTTCTGCAGCCTCAAAAGCAGCTTCCGCCGACTGAGCGCTCACCCCGGGGTCCGTGCTGGACTCAGCCTTGACTCGGATGCCCACCCTGAGCCCCACCCGAGAAAGGGATTATTTCATCCCTGCATTATTTCCTTAGAGCTGATGGCAGAATCTGCTCATCTCCAAATTCGCTGTCTCCCCGTTAGGAGTGAGCTTGGTGAGGGCTCCAATCTGGTCTCCCCCGTTCATTGCTGAGTCCCTGGCACCCAGCATCAGCCCCGCATGGAGCAGCTAGTCAATAAAGCTTTGCTGGACACATTTCAGATGAAGAGACTGAGGGTCAGAGAGGTCACATGGCTTGCTTGGAAGAAACATCAGATTTGTCTGGCTCAAGAGTCCACTTCTGGCTCCCCCCTCACACAGTTGCTTAAGAGACCCCCAGCCCAAGACAGCCTCAGAGCCTGGGTCTTCCCCCCCTCCGCCCATTCTCAGGCCCTTATACTAAAACCAGAGAGGCCTCTGAACTGCTGTCTGCCCCCCCAACCTTTTCCTTGCTTATCTGGGAATCACGCAAAAGTTGGCCAGAGTTAGCTCAGTCTCAGAGAAGCTGCATTCTTCTAGAGTCACTCGGTTTTGCGTGACCTGATTCAAATTTTCCATCTTTGTCACTTTGATTCCCACTCTGAGAAGTTTTCTCAGTACATATAACCTTACTATGTGATGACTGGCCTGGGTATTCATATGTGCACTTGTTACCTGTTGCTTATCTCCTGGGGGACCCCTGGTTCAGAGGGGTTTAAGCAGGTGTCCTGGTGAGACCGGGGTTATAATCAGAGACTCTCAGGGTTAGAGCTTGGCCCTGCCACTGAGTGGCCTTGGGAGTCTCATTTGACCTCTCTGAACCTTGGATTCCTCACTTGTGAAATGGGGACAGGTTGAGTTCCTGCATGGAAAGTGTCTTGCTTGATGTCTCGCCAAAAGACCAAAACTGCCGTCACTCACTGCCGGAGAGGCCCTGCACGTGGATATTAGAGTTTGCTGGGTTTTGTTTGTCCTGAGCGAATGTCCGTCCATGTACAGGCTGATGGATTTTGTAGGTGCAAGGTCCCTAACGCAATCAATCTCTCTCCTCAAAAGACCATGAGCATGCCTGGACTCAGAGAGCACCGTGTGTGGGGGGCTGGCGTGGGCACGTGTCCGCAGCTGGGACTGGCTTCTAGGGTTCTGGGCTCAGGCAGGAGGGCGGGGTCCCAGGAGGTCATCTCTCTCTCCTTACCCTGGAGCCTTTGGAATTTGGTTTCCAAATGTCCTGAATTCCTGTTCATTAATATGTGGCTCAGTACAGTGCTTGTCCCGGCAGCAGGAGCTTGGTTGGTGTTAGTCTGCTGGGGAATGGGATAAAGCAGAGAAATGTCAAGCTTTCCCTTAAAAACAAAAAACAAAAGCAAACCCTCACATCTCCCACCAATAACACACCATTGTTATCCCTGTACTTAAGACATGTTGTTGCCGGGCATGGTAGCTCACACTTGTAATCCCGACACTTTGGGAGGCTGAGGCGGGTGGGTCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCTGGAACCCGGGAGGTGGAGGTTGTGGTGAGCTGAGATCGCACCATTGCCCTCCAGCCTGGGCAACAAGAGCAAAACTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179082:ENST00000316786:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAACTGCTGAGACGAG
R:
TGTGAACAGCCATGTGGTTCC
Band lengths:
353-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains