HsaINT1007687 @ hg38
Intron Retention
Gene
ENSG00000147434 | CHRNA6
Description
cholinergic receptor nicotinic alpha 6 subunit [Source:HGNC Symbol;Acc:HGNC:15963]
Coordinates
chr8:42756928-42759113:-
Coord C1 exon
chr8:42759069-42759113
Coord A exon
chr8:42757038-42759068
Coord C2 exon
chr8:42756928-42757037
Length
2031 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
CTGATTTCTATTTATTTTAGATC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GATGAAGTAAACCAGATCATGGAAACCAATTTGTGGCTGCGTCAC
Seq A exon
GTATGTGCCTATATCATGTGTTGGCTTAATGATGTTGAATGGATAAAACCCACAAGCACTACCTTGTTCCATCTCCAACTGGTTATAGAATATAAAATATTATCCACTAGGTCATCTCCAAAGCCTAAAGTTCAGCTCTGGTAATAGCTGACTTGATGCATGCTTCACAGGTGCAGACACTTAGTGACAAAGGTCCCTCTGACATAGAGGTTTCCATCCTTCCTGGTTGCTGCTCTCAGATCTTCCACTTTTCTGTAACTTGAGCTCCAGGGTCTGATGCTTGCCTGCTCTTTGATCCCTGCTTGACCAGGCTTGGAGAAGTCAGTAGCTGAGCTTGGGAGCATGTACATGAGATTCCCAGCAGCTGGTTTTATCAGTTATACCTTTCTTCCTTAAGAAAGTCTTGGAGGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGCCCAAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAACTTGGCCAACATGGTGAAATGAAACCCTGTCTCTAATAAAGATACAAAATTAGCCCGGCGTGGTGGTGGGTGCCCGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGTAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCACTACATTCCAGCATGGGCAACAGAGCGAGACTCTGTCTTGAAAACAAAACAAAACAAAAAAAAAACAGAAAGGAAGTCTTAATCGTTTATACAGATTTTTTTTTAATTCAAAGCTTATCATCATACCCTTGAACTTTTTGATATTAGAGCTATACTCCAGTGTGAGTATAGCTCACGGAATATGGAAGTTGAGCCTAAAACTTTAACCAGCTAACTAATAATCAATACATAATTATCTAATGAAATATTTGCCTAAATCAGCTCAGCTATTTAGCTCCCTGTTCCCCATGGATATAATTGTCCAGATTTTGATAGCAACCAATGCATTCTTCAAATAAGAATGTATTATTTTTACTTTTTTTTTTTGTTTTTTGGTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTCCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACTACAGGGGCCCGCCACCACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGGCAGGATGGTCTCGATCTCCTGACATCGTGATCTGCACGCCTCGGCCTCCCAACGTGCTGGGATTACAGGCGTGAGCCATCGCGCCGGGCCACTTTTTTTTTTTTTTTTTGAGACAGAGTCCCGGTCCGTCGCCTAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCAACCACCACCATGCCTGGCTAATTTTTTTTTTTTTTTGTATTTTTAGTAAAAATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTTCTGACCTAGTGATCCGCTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAAATGTATTCTTTTTTCAACAACAACTGTTGAACCATCATAAAGTTAACATTGGAAGAAAGTTATTAAGAAACACATTTTTTTTTTCCAGATAGAGTCACCCAGGCTGTAGTACAGTGACATGATCTCAGCTCACTGCAAACTCTGCCCCCCACGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGACTACAGGCGCTGGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGCTGGCCAGGCTGGTCTCGACCTCCTGACCTCAAGTGACCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCGAAAGTTATTAAGAAATTTTAAAAGCTGATTTCTATTTATTTTAG
Seq C2 exon
ATCTGGAATGATTATAAATTGCGCTGGGATCCAATGGAATATGATGGCATTGAGACTCTTCGCGTTCCTGCAGATAAGATTTGGAAGCCCGACATTGTTCTCTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147434:ENST00000276410:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(7.2=88.9)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains