BtaINT0038360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014056 | CHRNA6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MQ06]
Coordinates
chr27:37199417-37200671:-
Coord C1 exon
chr27:37200627-37200671
Coord A exon
chr27:37199527-37200626
Coord C2 exon
chr27:37199417-37199526
Length
1100 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
CTGACTCCTATTTCCTGCAGATC
3' ss Score
10.73
Exon sequences
Seq C1 exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTACGTCAC
Seq A exon
GTATGTGTCTATGTCACTTACGCTTCTCTGGGAACTATGTCACTGACGTGTCAGTTTAATAATGTCCAGTGGATAAAACCCACTAGAACTCCCTCTTTCCATCTCCAGTTTATGACAGAGAATAAAATAGTGTCTATCTCCAAAGCCCAAACTTCAATCTGGTAACAGCTGCCTGGCTGCAAACTTCAGGTGCAGAACCTAGGGATAAAGTTCTCACTGACTCCGGCCTTTGAAGGTCTCCTATTTTTGTTTGTATCTTGAGCTCCAGAGCCAGATGCTTACCTGCTCTTTGATTCTGCTGTGGCTTAGATTCCCACTATTTGGTTTAATCAGTCATGCCATCTTATTCTTCCTTTTGCTCTTAATCTTTTATGCAGATTTTGTAATAAACCTGCCATCCTACTATCTTTTTATTATTAGAGATGGATTGCTACCAGAGATTGAACATAGTCTATGGAATGTGGAAACTGAGTCTATAAACTTGATCAGCTAATCAATAATCAATAGATGCATATCTAATATCTAGTGGATAACCTATTTTTGCCCCAATCAGCTCAACCACCTTGTTCCCCTTGAGTTTAATCTCCCAGCTTTTGGTAGAAACCAAAGTAAAGTGAAAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCATGGACTATACAGTCCATGGAATTCTCCAGGCCAGGATACTGGAGTGGGCAGCCTTTCCCTTCTCCAGGGATCTTCCCAACTCAGGGATCGAACCCAGGTCTCCCGCATTGCAGGTGGATTCTTTACCAACTGAGCCACCAGGGAAGCCCAAGAATATTGGAGTGGGTAGCCTATCCCTTCTCCCAGCGGATCTTCCCAACCCAGGAATCAAACCAGAGTCTCCTGCATTTCCACATTCAAAGGGCCATATTCAATCTCTAGTAACAATCCACTTCTAATAGTAAAAGATAGTAAGATGATAGGTTTATTGCAAAGTCTGCATAAAAGATTAAGAGCAAAAGGAATAAGTTGGAATGACTGATTTTTCAAAAAAATGTTGAACCAATATAGGACTAACATATTAAAAGTAAGTGAAGAATTTTTTAAACTGACTCCTATTTCCTGCAG
Seq C2 exon
ATCTGGAATGATTATAAACTGCGTTGGGACCCCACGGAATATGACGGCATTGAGACTCTCCGTGTTCCTGCCGAGATGATCTGGAAGCCCGACATCGTTCTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014056:ENSBTAT00000018679:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]