BtaEX6107258 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014056 | CHRNA6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MQ06]
Coordinates
chr27:37198339-37206607:-
Coord C1 exon
chr27:37206468-37206607
Coord A exon
chr27:37199417-37199526
Coord C2 exon
chr27:37198339-37199317
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGACTCCTATTTCCTGCAGATC
3' ss Score
10.73
5' ss Seq
CAAGTATGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
GCTGTGCCGGCTGTGCATCGGAGGAGAGGCTCTTTCACAAGCTGTTCGCTCATTATAACCAGTTCATCAGGCCCGTGGAGAACGTTTCCGACCCGATCACCGTGTATTTTGAAGTGGCCATCACACAGCTGGCTGATGTG
Seq A exon
ATCTGGAATGATTATAAACTGCGTTGGGACCCCACGGAATATGACGGCATTGAGACTCTCCGTGTTCCTGCCGAGATGATCTGGAAGCCCGACATCGTTCTCTACAACAA
Seq C2 exon
TGCGGTCGGCGACTTCCAAGTCAAAGGCAAGACAAAAGCTCTTCTTAAATACGATGGCATGATAACCTGGACTCCACCAGCGATTTTTAAGAGTTCCTGTCCAATGGACATCACTTTTTTCCCTTTTGACCATCAAAATTGTTCCCTGAAATTTGGTTCCTGGACTTACGACAAAGCTGAAATTGACCTTCTAATCATTGGCTCTAAAGTGGACATGAATGAGTTTTGGGAGAACAGCGAGTGGGAAATTGTCGACGCTTCTGGCTACAAGCATGACATAAAGTACAACTGTTGTGAAGAGATATACACAGACATCACCTACTCTTTCTACATCAGGAGGCTCCCAATGTTTTACACCATTAATCTGATCATCCCCTGCCTCTTTATCTCGTTCCTCACTGTCTTGGTCTTCTACCTCCCTTCTGACTGTGGTGAAAAGGTGACTCTTTGCATTTCAGTGCTGCTTTCTCTGACTGTGTTTTTGCTGGTGATCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014056-'2-3,'2-2,5-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=35.2),PF0293211=Neur_chan_memb=PU(86.1=62.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGTTTCCGACCCGATC
R:
CAGCTTTGTCGTAAGTCCAGGA
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]