BtaEX0009011 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014056 | CHRNA6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MQ06]
Coordinates
chr27:37199417-37206607:-
Coord C1 exon
chr27:37206468-37206607
Coord A exon
chr27:37200627-37200671
Coord C2 exon
chr27:37199417-37199526
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACATTGTTTCCTCTTCCCAGGAT
3' ss Score
10.09
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCTGTGCCGGCTGTGCATCGGAGGAGAGGCTCTTTCACAAGCTGTTCGCTCATTATAACCAGTTCATCAGGCCCGTGGAGAACGTTTCCGACCCGATCACCGTGTATTTTGAAGTGGCCATCACACAGCTGGCTGATGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTACGTCAC
Seq C2 exon
ATCTGGAATGATTATAAACTGCGTTGGGACCCCACGGAATATGACGGCATTGAGACTCTCCGTGTTCCTGCCGAGATGATCTGGAAGCCCGACATCGTTCTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014056-'2-2,'2-1,4-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGTTTCCGACCCGATC
R:
GATCATCTCGGCAGGAACACG
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development