HsaEX0015314 @ hg19
Exon Skipping
Gene
ENSG00000147434 | CHRNA6
Description
cholinergic receptor, nicotinic, alpha 6 (neuronal) [Source:HGNC Symbol;Acc:15963]
Coordinates
chr8:42612071-42620347:-
Coord C1 exon
chr8:42620208-42620347
Coord A exon
chr8:42614212-42614256
Coord C2 exon
chr8:42612071-42612180
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTATTATTTCTTCTTCCCAGGAT
3' ss Score
9.38
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCTGTGTGGGCTGTGCAACTGAGGAGAGGCTCTTCCACAAACTGTTTTCTCATTACAACCAGTTCATCAGGCCTGTGGAAAACGTTTCCGACCCTGTCACGGTACACTTTGAAGTGGCCATCACCCAGCTGGCCAACGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAAACCAATTTGTGGCTGCGTCAC
Seq C2 exon
ATCTGGAATGATTATAAATTGCGCTGGGATCCAATGGAATATGATGGCATTGAGACTCTTCGCGTTCCTGCAGATAAGATTTGGAAGCCCGACATTGTTCTCTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147434_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=PU(7.2=88.9)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGGCCTGTGGAAAACG
R:
CGCGAAGAGTCTCAATGCCAT
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)