GgaEX6050568 @ galGal3
Exon Skipping
Gene
ENSGALG00000015384 | F1NA49_CHICK
Description
NA
Coordinates
chrZ:52503824-52508264:-
Coord C1 exon
chrZ:52508113-52508264
Coord A exon
chrZ:52507307-52507351
Coord C2 exon
chrZ:52503824-52503933
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTACCTTGTGTTGCCCTAGGAT
3' ss Score
10.15
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGTGGCTGCCCTTGGTTCGGTTGCGGAGAATGAGGATGCGCTCCTGAGACACTTATTTCAAGGCTATCAGAAATGGGTCCGCCCCGTGGAAAACTCCAACGACACCATCAAAGTCCTCTTTGGGTTAAAGATATCACAGCTTGTGGACGTG
Seq A exon
GATGAGAAGAACCAGCTGATGACGACCAACGTGTGGCTGAAGCAG
Seq C2 exon
GAATGGATGGACCACAAGCTCTCCTGGAATCCAGAGGAATATGGTGGGATCACTGCTATCCGTGTCCCTTCTGAGTCCCTGTGGCTTCCCGACATTGTTCTGTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015384-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.0=76.5)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGAAAACTCCAACGACA
R:
ACACGGATAGCAGTGATCCCA
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]